PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN14573.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 179aa    MW: 20307.4 Da    PI: 9.0956
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN14573.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH247.1e-083964630
                HHHHHHHHHHHHHHHHHHHCTSCC.C CS
         HLH  6 nerErrRRdriNsafeeLrellPk.a 30
                 ++ErrRR+r+N+ ++ Lr ++Pk +
  KHN14573.1 39 LMAERRRRKRLNDQLSMLRAIVPKiS 64
                589********************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.1413385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-103798IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00193991IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-53964IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-124097IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.66E-64089No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
TTCKMEPTQS SEMLVFNMGT GLERKNRSNK LQGQPSKNLM AERRRRKRLN DQLSMLRAIV  60
PKISKVCTMQ TSILGDSTID YMKELLEKIN NLQQEVEVDS NMAGIFKDVK PNEILVRNSP  120
KVNTREALGL EIQQCVISCF NDFTMQSSCS EESEQRTMLS SKDIKQALFR SAGYGGRCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14148ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN14573.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0969921e-168BT096992.1 Soybean clone JCVI-FLGm-21O6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028228327.11e-101transcription factor bHLH93-like
SwissprotQ9LSL12e-56BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A0B2Q3L41e-128A0A0B2Q3L4_GLYSO; Transcription factor bHLH93 (Fragment)
STRINGGLYMA04G09580.11e-101(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.16e-59beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  4. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  5. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  6. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]