PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN14729.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

GeBP

Protein Properties

Length: 319aa MW: 35929.9 Da PI: 10.018

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN14729.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	120.2	1.1e-37	57	152	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 lfqrlw++eDei lLqG+++++a++g+s ++d+ fy+++k+++++ ++k+qlveK+rrLKkK+++ +k++sgke+sf+++hd+ +fe+s++iW KHN14729.1 57 LFQRLWTDEDEIGLLQGFLEYTAQRGSSHHNDTALFYDQIKSKLQLGFNKNQLVEKLRRLKKKYRNVLNKISSGKEVSFKSPHDRATFEISRRIWS 152 79*********************************************************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.8E-34	58	152	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MTMKPNPLPP SSPSRRPLPK RSNTALIPIS SVADSSPKPL RTELIEEKKA LDDSRRLFQR 60 LWTDEDEIGL LQGFLEYTAQ RGSSHHNDTA LFYDQIKSKL QLGFNKNQLV EKLRRLKKKY 120 RNVLNKISSG KEVSFKSPHD RATFEISRRI WSNTAPITGP VEDDDEIITN PNFGNSAKMP 180 ISRKRSRPQK RELNDGSTLN RDNNCNSNSN NNNNNENCNS RLNLQGLIEE TVRSCVSPVL 240 KELACGTGGM GLGRGFALNP LQMPMPMSLM NLGIVGETAM DEKWRKQQIL ELEVYSKRLE 300 LVQNEIKVAL EELRSAGGG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN14729.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	1e-159	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003556486.1	0.0	probable transcription factor At5g28040
Refseq	XP_028222838.1	0.0	probable transcription factor At5g28040
Swissprot	F4K5T4	4e-86	STKLU_ARATH; Probable transcription factor At5g28040
TrEMBL	A0A0B2Q407	0.0	A0A0B2Q407_GLYSO; Uncharacterized protein
STRING	GLYMA20G37240.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3255	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	1e-83	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes. Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586 [PMID:29264953]