PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN14819.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 962aa MW: 108447 Da PI: 5.0111

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN14819.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.1	9.6e-14	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l KHN14819.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78***************************.**********986 PP
2	Myb_DNA-binding	32.8	1.6e-10	60	103	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l KHN14819.1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68***************99.****8..********9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	22.008	2	57	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.6E-18	5	56	IPR009057	Homeodomain-like
SMART	SM00717	7.0E-15	6	55	IPR001005	SANT/Myb domain
CDD	cd00167	5.90E-12	10	53	No hit	No description
Pfam	PF13921	4.6E-13	10	70	No hit	No description
SuperFamily	SSF46689	6.11E-21	33	107	IPR009057	Homeodomain-like
CDD	cd11659	1.93E-30	55	106	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.9E-14	57	104	IPR009057	Homeodomain-like
SMART	SM00717	5.2E-12	58	105	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	15.803	58	107	IPR017930	Myb domain
Pfam	PF11831	7.3E-62	406	654	IPR021786	Pre-mRNA splicing factor component Cdc5p/Cef1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051301	Biological Process	cell division
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 962 aa Download sequence Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDVACVKD ENYEPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TKGKKAKRKA REKQLEEARR 180 LASLQKKREL KAAGIDIRQR KRKRKGIDYN AEIPFEKRPP PGFFDVTDED RPVEQPQFPT 240 TIEELEGKRR VDVEAQLRKQ DIAKNKIAQR QDAPSAILHA NKLNDPETVR KRSKLMLPPP 300 QISDQELDDI AKLGYASDLA GSQELAEGSR ATQALLTNYA QTPGQGMTPL RTPQRTPAGK 360 GDAIMMEAEN LARLRESQTP LLGGENPELH PSDFSGVTPK KKEIQTPNPM LTPSATPGAA 420 GLTPRIGMTP TRDGFSFSMT PKGTPLRDEL HINEDMNMHD STKLELQRQA DMRRSLRSGL 480 GSLPQPKNEY QIVMPPVLED AEEPEEKIEE DMSDRIAREK AEEEARQQAL LRKRSKVLQR 540 ELPRPPTASL ELIRNSLMRT DGDKSSFVPP TSIEQADEMI RRELLTLLEH DNGKYPLDDK 600 VIKEKKKGAK RAVNGSAVPV IEDFQEDEMK EADKLIKEEA LYLCAAMGHE DEPLDEFIEA 660 HRTCLNDLMY FPTRNAYGLS SVAGNMEKLA ALQNEFENVR NKLDDGKEKM VRLEKKVMVL 720 TQGYEMRVKK SLWPQIEATF KQMDVAATEL ECFKALQKQE QLAASHRINN LWGEVQKQKE 780 LEKTLQNRYG SLIEELEKMQ NVMDQCRLLA QQQEEIEANN HARESTEIIE SKAGETDVQS 840 TENCETVPDS VEHGHALAVE SSDDGTADQQ VDIVHDQATS SVSHDMDVDS DKLANPTPAA 900 ENVDGKLEVT ATASYTDDGK TMLEMGAAVE VSSSPNHDVV ADAVNSHDNS MEETNAVGEE 960 TN

Sequence ? help Back to Top

Protein Sequence Length: 962 aa Download sequence Send to blast

MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDVACVKD ENYEPGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TKGKKAKRKA REKQLEEARR  180
LASLQKKREL KAAGIDIRQR KRKRKGIDYN AEIPFEKRPP PGFFDVTDED RPVEQPQFPT  240
TIEELEGKRR VDVEAQLRKQ DIAKNKIAQR QDAPSAILHA NKLNDPETVR KRSKLMLPPP  300
QISDQELDDI AKLGYASDLA GSQELAEGSR ATQALLTNYA QTPGQGMTPL RTPQRTPAGK  360
GDAIMMEAEN LARLRESQTP LLGGENPELH PSDFSGVTPK KKEIQTPNPM LTPSATPGAA  420
GLTPRIGMTP TRDGFSFSMT PKGTPLRDEL HINEDMNMHD STKLELQRQA DMRRSLRSGL  480
GSLPQPKNEY QIVMPPVLED AEEPEEKIEE DMSDRIAREK AEEEARQQAL LRKRSKVLQR  540
ELPRPPTASL ELIRNSLMRT DGDKSSFVPP TSIEQADEMI RRELLTLLEH DNGKYPLDDK  600
VIKEKKKGAK RAVNGSAVPV IEDFQEDEMK EADKLIKEEA LYLCAAMGHE DEPLDEFIEA  660
HRTCLNDLMY FPTRNAYGLS SVAGNMEKLA ALQNEFENVR NKLDDGKEKM VRLEKKVMVL  720
TQGYEMRVKK SLWPQIEATF KQMDVAATEL ECFKALQKQE QLAASHRINN LWGEVQKQKE  780
LEKTLQNRYG SLIEELEKMQ NVMDQCRLLA QQQEEIEANN HARESTEIIE SKAGETDVQS  840
TENCETVPDS VEHGHALAVE SSDDGTADQQ VDIVHDQATS SVSHDMDVDS DKLANPTPAA  900
ENVDGKLEVT ATASYTDDGK TMLEMGAAVE VSSSPNHDVV ADAVNSHDNS MEETNAVGEE  960
TN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5mqf_L	0.0	2	801	3	800	Cell division cycle 5-like protein
5xjc_L	0.0	2	801	3	800	Cell division cycle 5-like protein
5yzg_L	0.0	2	801	3	800	Cell division cycle 5-like protein
5z56_L	0.0	2	801	3	800	Cell division cycle 5-like protein
5z57_L	0.0	2	801	3	800	Cell division cycle 5-like protein
5z58_L	0.0	2	801	3	800	Cell division cycle 5-like protein
6ff4_L	0.0	2	801	3	800	Cell division cycle 5-like protein
6ff7_L	0.0	2	801	3	800	Cell division cycle 5-like protein
6icz_L	0.0	2	801	3	800	Cell division cycle 5-like protein
6id0_L	0.0	2	801	3	800	Cell division cycle 5-like protein
6id1_L	0.0	2	801	3	800	Cell division cycle 5-like protein
6qdv_O	0.0	2	801	3	800	Cell division cycle 5-like protein
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	185	204	KKRELKAAGIDIRQRKRKRK
2	199	204	RKRKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250\|UniProtKB:Q99459, ECO:0000269\|PubMed:17298883, ECO:0000269\|PubMed:17575050, ECO:0000269\|PubMed:8917598}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN14819.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003536137.1	0.0	cell division cycle 5-like protein isoform X2
Refseq	XP_006589207.1	0.0	cell division cycle 5-like protein isoform X2
Refseq	XP_028182163.1	0.0	cell division cycle 5-like protein isoform X2
Refseq	XP_028182164.1	0.0	cell division cycle 5-like protein isoform X2
Swissprot	P92948	0.0	CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBL	A0A445INF5	0.0	A0A445INF5_GLYSO; Cell division cycle 5-like protein isoform B
TrEMBL	I1LBQ2	0.0	I1LBQ2_SOYBN; Uncharacterized protein
STRING	GLYMA10G30870.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4072	33	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	cell division cycle 5

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Li S, et al. MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis. Plant Cell, 2018. 30(2): p. 481-494 [PMID:29437988]