PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN14878.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 149aa    MW: 17135.2 Da    PI: 7.184
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN14878.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like73.52.9e-232982155
     G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                kprl W +eLH++Fve v q+ G +kA Pk+i+e+m+++gLt+e+v+SHLQk+R 
  KHN14878.1 29 KPRLMWRQELHQQFVEDVMQI-GLDKAKPKRIVEAMNIPGLTREQVASHLQKHRH 82
                79*******************.*******************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.9E-242782IPR009057Homeodomain-like
SuperFamilySSF466897.88E-162782IPR009057Homeodomain-like
TIGRFAMsTIGR015576.2E-202982IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
ARGQEKIGTN FKESDSDELD DSFAPPTKKP RLMWRQELHQ QFVEDVMQIG LDKAKPKRIV  60
EAMNIPGLTR EQVASHLQKH RHELLLNTSK GVTLQQNEKT LSNNIESKRR AGAYGRFDLT  120
AFGDTSHLSY AALHPEERME DQWPYYSLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A6e-152981153Transcription factor LUX
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN14878.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014627221.15e-83two-component response regulator ARR14-like
RefseqXP_028217064.15e-83two-component response regulator ARR14-like
TrEMBLA0A0B2Q4F11e-108A0A0B2Q4F1_GLYSO; Two-component response regulator ARR1 (Fragment)
STRINGGLYMA19G07198.16e-52(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3667122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.11e-22response regulator 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]