PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN15010.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 134aa    MW: 15432.7 Da    PI: 9.7439
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN15010.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1392.8e-43171323118
         NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelv 100
                  GfrFhP+deel+v+yL++kv++++l++ ++i+e+d+y+++Pw+Lp+k+  +e+ewyfF++rd+ky++g r+nrat+sgyWk tg+dk+++++ + + +
  KHN15010.1  17 LGFRFHPSDEELIVHYLRNKVTSSPLPA-SFIAEIDLYNYNPWELPSKALFGEDEWYFFTPRDRKYPNGMRPNRATTSGYWKPTGTDKPIFTScGMKSI 114
                 6***************************.89***************87778999**************************************977788* PP

         NAM 101 glkktLvfykgrapkgek 118
                  +kk Lvfykgr pkg+k
  KHN15010.1 115 TVKKALVFYKGRPPKGSK 132
                 ****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-477133IPR003441NAC domain
PROSITE profilePS5100544.74915134IPR003441NAC domain
PfamPF023655.2E-2018124IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MLIQKSNSLL DLDSTFLGFR FHPSDEELIV HYLRNKVTSS PLPASFIAEI DLYNYNPWEL  60
PSKALFGEDE WYFFTPRDRK YPNGMRPNRA TTSGYWKPTG TDKPIFTSCG MKSITVKKAL  120
VFYKGRPPKG SKID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-481813418132Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN15010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354608e-88AC235460.1 Glycine max strain Williams 82 clone GM_WBb0169H15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553546.26e-77NAC transcription factor 25 isoform X2
RefseqXP_028215986.16e-77NAC domain-containing protein 2-like
SwissprotQ8GY422e-60NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A0B2Q1008e-95A0A0B2Q100_GLYSO; NAC domain-containing protein 29
STRINGGLYMA19G36421.12e-76(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24162981
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.19e-63NAC domain containing protein 25
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]