PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN15166.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NF-YB

Protein Properties

Length: 157aa MW: 17422.6 Da PI: 4.347

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN15166.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	77.3	2.3e-24	11	94	3	86
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 ++d+ lP a +s+i+k++lP + ++++da++++ ec +efi +v+se+++ c+re+++t++++ +l al lGf +yve++ + KHN15166.1 11 KEDASLPKATMSKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNREDKRTVAPEHVLKALQVLGFGEYVEEVYAA 94 6899***************************************************************************98654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	9.9E-39	8	141	IPR009072	Histone-fold
SuperFamily	SSF47113	3.1E-35	12	144	IPR009072	Histone-fold
Pfam	PF00808	1.9E-21	14	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MEPMDIVGKS KEDASLPKAT MSKIIKEMLP PDVRVARDAQ DLLIECCVEF INLVSSESNE 60 VCNREDKRTV APEHVLKALQ VLGFGEYVEE VYAAYEQHKL ETMQDSLRGG GKWSNGAEMT 120 EEEALAEQQR MFAEARARMN GGAIASKQPD ADQSLDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	5e-34	12	136	12	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN15166.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT136794	1e-164	BT136794.1 Lotus japonicus clone JCVI-FLLj-3M19 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001350889.1	1e-113	class 2 transcription repressor NC2 beta 1 isoform 1
Refseq	XP_028231235.1	1e-113	protein Dr1 homolog isoform X1
Swissprot	P49592	2e-91	NC2B_ARATH; Protein Dr1 homolog
TrEMBL	I1K186	1e-112	I1K186_SOYBN; Uncharacterized protein
STRING	GLYMA05G07750.1	1e-112	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4766	33	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.2	7e-84	nuclear factor Y, subunit B13

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]