PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN15212.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 196aa    MW: 21961.9 Da    PI: 10.3383
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN15212.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.89e-067193123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                + C++C+k F r  nL+ H r H
  KHN15212.1 71 FICEICNKGFQRDQNLQLHRRGH 93
                89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.99E-56994No hitNo description
Gene3DG3DSA:3.30.160.604.5E-67093IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0227193IPR015880Zinc finger, C2H2-like
PfamPF121711.8E-57193IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.8457193IPR007087Zinc finger, C2H2
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SMARTSM00355170113143IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MSNLTSTFAE ARASSDNRTE IGTDYSQQYF TPPQTQTQPP LKKKRNLSAN PDPKAEVVSL  60
SPKTLLASNR FICEICNKGF QRDQNLQLHR RGHNLPWKLN QRSSKEIIRK KVYVCPEASC  120
MHHEPSRALG DLTGIKKHLC RKHGQKKRDS FITHRAFCDA LAEETARSVT GIVANSTTQP  180
TKVAGIVISS SSWEVS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN15212.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014621596.11e-107protein indeterminate-domain 11
RefseqXP_028186304.11e-108protein indeterminate-domain 11-like
RefseqXP_028186906.11e-107protein indeterminate-domain 11-like
SwissprotQ9LRW72e-75IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLA0A0B2Q5X91e-145A0A0B2Q5X9_GLYSO; Zinc finger protein MAGPIE
STRINGGLYMA01G27910.11e-132(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.13e-76indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]