PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN15359.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NAC

Protein Properties

Length: 357aa MW: 39719.9 Da PI: 8.935

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN15359.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.7	1.5e-55	11	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lppGfrFhPtdeel+++yL++k+++++++ ++i++vd++k+ePw+Lp+k+k ++kewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+l++ ++e KHN15359.1 11 LPPGFRFHPTDEELISYYLTNKISDSNFTG-KAIADVDLNKCEPWELPEKAKMGQKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEILNSaTSE 108 79***********************999.88***********99999************************************987889 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 lvg+kktLvfykgrap+gek++Wvmheyr+ KHN15359.1 109 LVGMKKTLVFYKGRAPRGEKSNWVMHEYRI 138 9*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-63	9	161	IPR003441	NAC domain
PROSITE profile	PS51005	61.259	11	161	IPR003441	NAC domain
Pfam	PF02365	6.6E-29	12	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MEGNHEKEET LPPGFRFHPT DEELISYYLT NKISDSNFTG KAIADVDLNK CEPWELPEKA 60 KMGQKEWYFF SLRDRKYPTG VRTNRATNTG YWKTTGKDKE ILNSATSELV GMKKTLVFYK 120 GRAPRGEKSN WVMHEYRIHS KSSSFRTNKQ DEWVVCRVFR KSAGAKKFPS SSHIRALNLN 180 PFSLEVGPSI MPPPPMMHLA DPAAAAHFLY GRNYMMNPSE VAEVTRVLRG GGPTNVNVMN 240 MNLPMQYSHL NNPVAGGGGE GFTISGLNLN LGGTVATTTA QAQQSLLRPM MPPPQPSPAH 300 TIAQVHHDFS SNMVTPNIAL AADNVGYGGE VASANSHGNR YMGMDHCMDL DNYWPSY

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MEGNHEKEET LPPGFRFHPT DEELISYYLT NKISDSNFTG KAIADVDLNK CEPWELPEKA  60
KMGQKEWYFF SLRDRKYPTG VRTNRATNTG YWKTTGKDKE ILNSATSELV GMKKTLVFYK  120
GRAPRGEKSN WVMHEYRIHS KSSSFRTNKQ DEWVVCRVFR KSAGAKKFPS SSHIRALNLN  180
PFSLEVGPSI MPPPPMMHLA DPAAAAHFLY GRNYMMNPSE VAEVTRVLRG GGPTNVNVMN  240
MNLPMQYSHL NNPVAGGGGE GFTISGLNLN LGGTVATTTA QAQQSLLRPM MPPPQPSPAH  300
TIAQVHHDFS SNMVTPNIAL AADNVGYGGE VASANSHGNR YMGMDHCMDL DNYWPSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-57	10	167	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-57	10	167	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-57	10	167	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-57	10	167	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-57	10	167	19	174	NAC domain-containing protein 19
3swm_B	1e-57	10	167	19	174	NAC domain-containing protein 19
3swm_C	1e-57	10	167	19	174	NAC domain-containing protein 19
3swm_D	1e-57	10	167	19	174	NAC domain-containing protein 19
3swp_A	1e-57	10	167	19	174	NAC domain-containing protein 19
3swp_B	1e-57	10	167	19	174	NAC domain-containing protein 19
3swp_C	1e-57	10	167	19	174	NAC domain-containing protein 19
3swp_D	1e-57	10	167	19	174	NAC domain-containing protein 19
4dul_A	1e-57	10	167	16	171	NAC domain-containing protein 19
4dul_B	1e-57	10	167	16	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN15359.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	2e-93	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028199933.1	0.0	NAC domain-containing protein 59-like isoform X1
Swissprot	Q9FLJ2	4e-80	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	K7M6P1	0.0	K7M6P1_SOYBN; Uncharacterized protein
STRING	GLYMA14G20276.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5073	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	1e-115	NAC domain containing protein 38

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]