PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN15422.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GeBP
Protein Properties Length: 154aa    MW: 17922.2 Da    PI: 10.0075
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN15422.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF5731025e-321881097
      DUF573 10 eDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97
                eDei lLqG++ +++++g+s ++d+  fy+++k++++++++k+qlveKirrLKkK+++  +++ sgke+sf+++hdq +fe+s+kiW 
  KHN15422.1  1 EDEIELLQGFLYYTSQQGSSHHSDTALFYDQIKSKLQLDFNKNQLVEKIRRLKKKYRNVLNNIFSGKEFSFKSAHDQATFEISRKIWS 88
                7**************************************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.2E-29188IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
EDEIELLQGF LYYTSQQGSS HHSDTALFYD QIKSKLQLDF NKNQLVEKIR RLKKKYRNVL  60
NNIFSGKEFS FKSAHDQATF EISRKIWSNV TPVGDNSLDD DEINPNRSPN PNLNFSPVIL  120
KNEMIFRNST EKKTPKRSRP RSAMKIEPNE LSAK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN15422.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353301e-176AC235330.1 Glycine max strain Williams 82 clone GM_WBb0082G12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003521741.13e-97probable transcription factor At5g28040
RefseqXP_028226669.13e-97probable transcription factor At5g28040
SwissprotF4K5T49e-38STKLU_ARATH; Probable transcription factor At5g28040
TrEMBLA0A0B2Q6I31e-108A0A0B2Q6I3_GLYSO; Uncharacterized protein (Fragment)
TrEMBLA0A445KKY21e-106A0A445KKY2_GLYSO; Putative transcription factor
STRINGGLYMA05G14455.11e-109(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32553365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.23e-40DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V
    The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes.
    Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586
    [PMID:29264953]