PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN15832.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 214aa    MW: 23377.2 Da    PI: 9.4489
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN15832.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.76.8e-194898155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  KHN15832.1 48 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 98
                68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.6E-134898IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-3249107IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2249107IPR016177DNA-binding domain
PROSITE profilePS5103223.4249106IPR001471AP2/ERF domain
SMARTSM003801.8E-3649112IPR001471AP2/ERF domain
PRINTSPR003672.1E-105061IPR001471AP2/ERF domain
CDDcd000181.92E-3150108No hitNo description
PRINTSPR003672.1E-107288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MRVSTQNNSE TESSSTSFLP PSPSPSPSSP PSSEFKTEKR NRESNKHPVY RGVRMRNWGK  60
WVSEIREPRK KSRIWLGTFP TPEMAARAHD VAALSIKGNS AILNFPELAA SLPRPVSLAP  120
RDVQAAAAKA AHMDLPSTSS SISSSLVPTT QSASSSSSSL SSLTSADLLP TASEELSEII  180
KLPRLETTSY ELGNEFVFMD SQDDTVVAYY LRRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-19461061172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN15832.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ8953450.0FJ895345.1 Glycine max TINY mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237808.21e-140AP2 domain transcription factor TINY
RefseqXP_028199679.11e-140ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD32e-67DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0B2Q7S31e-150A0A0B2Q7S3_GLYSO; Dehydration-responsive element-binding protein 3
STRINGGLYMA14G22740.11e-140(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.18e-64ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]