PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN15864.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NAC

Protein Properties

Length: 505aa MW: 57228.4 Da PI: 5.9438

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN15864.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	149.8	1.4e-46	11	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 +p+GfrF+Ptdeelv++yLk+k+ ++++++ ++i+e+d++kvePwd p + +k+++ ew+fFs+ d ky ++kr nr+tk+g+Wkatg+d+++ + KHN15864.1 11 MPVGFRFRPTDEELVDYYLKHKLLADDFPV-HIIPEIDLCKVEPWDVPgRsVIKSDDPEWFFFSPVDYKYLKSKRFNRTTKRGFWKATGNDRKIRIPgT 108 699*************************.89***********6347778888*********************************9977 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++++g+kktLvf++gr p+g kt+Wv+hey++ KHN15864.1 109 SNVIGTKKTLVFHQGRVPRGAKTNWVIHEYHA 140 888*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-51	8	158	IPR003441	NAC domain
PROSITE profile	PS51005	51.897	11	158	IPR003441	NAC domain
Pfam	PF02365	4.8E-25	12	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence Send to blast
MENIISICDH MPVGFRFRPT DEELVDYYLK HKLLADDFPV HIIPEIDLCK VEPWDVPGRS 60 VIKSDDPEWF FFSPVDYKYL KSKRFNRTTK RGFWKATGND RKIRIPGTSN VIGTKKTLVF 120 HQGRVPRGAK TNWVIHEYHA VTSHESQRAF VLCRLMKKAE KKNEGGIEAP SFDEGEPSIH 180 MVSDYGNPAR AEGIASVDII PGVDMDEIFR AVDQAEKFSP PVQQSPTGIG LEDFFPNSPL 240 FNARFGSENI NMQTSLEVTD DEDELVNSFL VYDEEFVINE ERRHCFVNSS TQPKSLRRVY 300 NESSEMDAEV VSNLNEHISS GEYPALKMFK SSHDVVRGGP SRLALNQKAN KEKKESIIQD 360 DLWAVETSSC DSTADEPIEI SSSPSTPTRL KNQYHLRPEN LILQRTVAGR PQTQKVSNNA 420 VSHLEVQKEL LTVKSEKDQK NAQNTSSRGN LKNKSQQSSD VNNNGSFFYM EMTSNQSLFP 480 RSVYLVNVVI GILLLIVISW DVLSC

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence Send to blast

MENIISICDH MPVGFRFRPT DEELVDYYLK HKLLADDFPV HIIPEIDLCK VEPWDVPGRS  60
VIKSDDPEWF FFSPVDYKYL KSKRFNRTTK RGFWKATGND RKIRIPGTSN VIGTKKTLVF  120
HQGRVPRGAK TNWVIHEYHA VTSHESQRAF VLCRLMKKAE KKNEGGIEAP SFDEGEPSIH  180
MVSDYGNPAR AEGIASVDII PGVDMDEIFR AVDQAEKFSP PVQQSPTGIG LEDFFPNSPL  240
FNARFGSENI NMQTSLEVTD DEDELVNSFL VYDEEFVINE ERRHCFVNSS TQPKSLRRVY  300
NESSEMDAEV VSNLNEHISS GEYPALKMFK SSHDVVRGGP SRLALNQKAN KEKKESIIQD  360
DLWAVETSSC DSTADEPIEI SSSPSTPTRL KNQYHLRPEN LILQRTVAGR PQTQKVSNNA  420
VSHLEVQKEL LTVKSEKDQK NAQNTSSRGN LKNKSQQSSD VNNNGSFFYM EMTSNQSLFP  480
RSVYLVNVVI GILLLIVISW DVLSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-37	11	158	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-37	11	158	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-37	11	158	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-37	11	158	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-36	11	158	20	168	NAC domain-containing protein 19
3swm_B	1e-36	11	158	20	168	NAC domain-containing protein 19
3swm_C	1e-36	11	158	20	168	NAC domain-containing protein 19
3swm_D	1e-36	11	158	20	168	NAC domain-containing protein 19
3swp_A	1e-36	11	158	20	168	NAC domain-containing protein 19
3swp_B	1e-36	11	158	20	168	NAC domain-containing protein 19
3swp_C	1e-36	11	158	20	168	NAC domain-containing protein 19
3swp_D	1e-36	11	158	20	168	NAC domain-containing protein 19
4dul_A	9e-37	11	158	17	165	NAC domain-containing protein 19
4dul_B	9e-37	11	158	17	165	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN15864.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	2e-76	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028207211.1	0.0	NAC domain-containing protein 62-like
TrEMBL	A0A445GCX6	0.0	A0A445GCX6_GLYSO; NAC domain-containing protein 62 isoform A
STRING	GLYMA07G05351.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2065	25	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49530.1	1e-55	NAC domain containing protein 62

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]