PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN15865.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 381aa    MW: 43450 Da    PI: 4.9103
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN15865.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM134.47.7e-4251353128
         NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                 +G+ F+Ptdeelv++yLk+k+ +++  + +vi +vd+++vePwd p      +v+ + +ew+fFs+ d ky+++kr nr+tk g+Wk tgkd+ + sk 
  KHN15865.1   5 VGYGFRPTDEELVKFYLKHKLLDDDPCV-HVILDVDLCEVEPWDVPLlladsAVRFNGREWFFFSPVDYKYSNSKRVNRTTKCGFWKPTGKDRGIRSKd 102
                 699********************99777.89**************95466665556889**************************************97 PP

         NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                 +++++g+kktLv+y+gr ++g+k++Wv+hey++
  KHN15865.1 103 TNNVIGTKKTLVYYQGRVSSGVKSNWVIHEYHA 135
                 7778***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100545.7393153IPR003441NAC domain
PfamPF023651.2E-235134IPR003441NAC domain
SuperFamilySSF1019414.97E-465153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MDDIVGYGFR PTDEELVKFY LKHKLLDDDP CVHVILDVDL CEVEPWDVPL LLADSAVRFN  60
GREWFFFSPV DYKYSNSKRV NRTTKCGFWK PTGKDRGIRS KDTNNVIGTK KTLVYYQGRV  120
SSGVKSNWVI HEYHAVTFHE SQRTFVLCRL MKKPGKTTEG GTDALICDEG GPSRSMVSDY  180
ENQATTQGIP SGGTFTGMET TFQGMHLAEK YFSPTQQSPT GIEQEEPSFT NYPFNNAYFR  240
NEDNFMQTPF ETKEEDAFLN SIFVDENLVI NEESMHAFVN SSTQSESLRR VYCESSDTDA  300
EVVSERRSET QRKVSNNAVS HVEAQKELLI VKTSSSQSLF PCLLYLVNLM VGILLLIVIR  360
LEWEVLSCYN FEIQVLCMKG L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-29615318168Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN15865.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028207212.10.0NAC domain-containing protein 76-like
TrEMBLA0A445GCW70.0A0A445GCW7_GLYSO; Protein NTM1-like 9
STRINGGLYMA16G01930.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.13e-44NAC transcription factor-like 9
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]