PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN16179.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GeBP
Protein Properties Length: 341aa    MW: 39143.7 Da    PI: 4.847
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN16179.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57348.72.2e-151281903497
      DUF573  34 idafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                 +  +y+ v+ +++++++++qlveK+rrLK+K k    k  ++ke+ f+++++q ife+s+kiW 
  KHN16179.1 128 VVSLYDHVRPKLNIDFNRNQLVEKLRRLKRKHKLALGK-GKDKEVPFRNPQEQAIFEISHKIWA 190
                 5679**********************************.8889999*****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.8E-15106189IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MHNCHKRTNG YLDTLICEKR KCDISSTMLS RLVSWILSPS SSEEEEEILD IIKDNDINHE  60
NDQKFNVEDD KNDHFLNSCD VDDTIPIALA VPNASPAVTV AFPANDERNT VPTTATHRKE  120
TTTLQNVVVS LYDHVRPKLN IDFNRNQLVE KLRRLKRKHK LALGKGKDKE VPFRNPQEQA  180
IFEISHKIWA NDTDNIIVQD ALDGDESGHT PESHDHVGNV KVKIEQVDNS DEIGNRVPKR  240
LRLDDADDMN RTNDQNNGDS IQGFIEDTMR SCFSPLLKEV LDEAQEESLP ELEAIPMPLC  300
SGEVDHEQWR KRRILELEVY VKRLELLQNQ IKSRLEELRS S
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN16179.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028184907.10.0probable transcription factor At5g28040
TrEMBLA0A0R0I2820.0A0A0R0I282_SOYBN; Uncharacterized protein
STRINGGLYMA10G30180.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1630579
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.11e-21DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]