PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN16216.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 129aa    MW: 14729.5 Da    PI: 9.6539
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN16216.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF337.9e-119431549
                HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgklyey 49
                kR +   KKA+ L +LCda+v++i+fsstgk + y
  KHN16216.1  9 KRIENTTKKANKLTILCDAKVSIIMFSSTGKRFFY 43
                7888888***********************96655 PP
2K-box29.92.4e-11861213873
       K-box  38 llGedLesLslkeLqqLeqqLekslkkiRskKnell 73 
                 ++G++L++L +++L+ Le+ ++k+ k +R++K +l+
  KHN16216.1  86 RMGDCLNELGMEDLRLLEEGMDKAAKVVRERKVRLI 121
                 7*******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554559.42E-14161IPR002100Transcription factor, MADS-box
SMARTSM004324.9E-12146IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.049147IPR002100Transcription factor, MADS-box
PfamPF003191.6E-8941IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-8924IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-82445IPR002100Transcription factor, MADS-box
Gene3DG3DSA:2.60.300.126.6E-92986IPR000361FeS cluster biogenesis
PfamPF014869.3E-686121IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MARGKIQIKR IENTTKKANK LTILCDAKVS IIMFSSTGKR FFYSLSREKG KFDELLEDKG  60
VNILIDPKAL MNVIGTKMDF VDDKLRMGDC LNELGMEDLR LLEEGMDKAA KVVRERKVRL  120
IICSSFCFT
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN16216.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352111e-68AC235211.1 Glycine max strain Williams 82 clone GM_WBb0019L21, complete sequence.
GenBankAC2354011e-68AC235401.1 Glycine max strain Williams 82 clone GM_WBb0122D05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014629918.17e-33floral homeotic protein DEFICIENS
RefseqXP_025982666.12e-33floral homeotic protein PMADS 1-like
RefseqXP_028227507.17e-33floral homeotic protein DEFICIENS-like
TrEMBLA0A0B2Q3S71e-86A0A0B2Q3S7_GLYSO; Floral homeotic protein DEFICIENS
STRINGGLYMA03G26261.12e-48(Glycine max)
STRINGGLYMA12G13560.12e-48(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.16e-21MIKC_MADS family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]