PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN16278.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 219aa MW: 23808.7 Da PI: 6.8869

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN16278.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.8	6.3e-11	100	147	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq KHN16278.1 100 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 147 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.27E-18	94	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.45E-11	94	151	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.7E-18	96	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.828	96	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-8	100	147	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-10	102	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MDPPLISDST FSPAYSLAEI WPGMPHFPDH SHLTATANDS GSNKRMKVGG SSFENDGFKA 60 EAEASSVGGN KSSEQSNKPC EAPKPDYIHV RARRGQATDS HSLAERARRE KISERMKILQ 120 DLVPGCNKVI GKALVLDEII NYIQSLQRQV EFLSMKLEAV NSRMNTNPTI DGFPSKDVGT 180 QPFDIAGMVF GSQAARGYAQ GSSHPGWLHM QIGGGFETT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may regulate jasmonate-regulated genes. {ECO:0000250\|UniProtKB:Q69WS3}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN16278.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT090847	0.0	BT090847.1 Soybean clone JCVI-FLGm-5B17 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001237962.2	1e-160	helix loop helix domain-containing protein
Refseq	XP_028229159.1	1e-160	transcription factor bHLH79-like
Swissprot	Q84T08	2e-73	BH089_ORYSJ; Transcription factor BHLH089
TrEMBL	A0A0B2Q8F4	1e-163	A0A0B2Q8F4_GLYSO; Transcription factor bHLH79
STRING	GLYMA04G34660.1	1e-159	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1171	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59640.1	7e-75	BIG PETAL P

Publications ? help Back to Top
Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]