PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN16369.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 641aa    MW: 71421.3 Da    PI: 6.556
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN16369.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.99.6e-2476176198
                 EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                 f kvlt sd++++g +++ +k+a e+     +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +++el+v
  KHN16369.1  76 FSKVLTASDTSTHGGFSVLRKHAMEClpaldMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--RGDNGELRV 172
                 88****************************977777888*************************************************..3489999** PP

                 EEE- CS
          B3  95 kvfr 98 
                 +v+r
  KHN16369.1 173 GVRR 176
                 **98 PP
2Auxin_resp92.95.2e-31202282183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsse..rrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++t++ F v+Y+Pr+  s+F+++v+k+++a+ +++svGmR+km+fe++ds+e  +r+sGt+vgv+d++p +W nSkWrsLk
  KHN16369.1 202 ASHAVATQTLFVVYYKPRT--SQFIISVNKYLEAM-NRFSVGMRLKMRFEGDDSAEtdKRFSGTIVGVEDISP-HWVNSKWRSLK 282
                 789***************6..9*************.89****************9833577**********99.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.36E-3867205IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-3968191IPR015300DNA-binding pseudobarrel domain
CDDcd100171.44E-2174176No hitNo description
SMARTSM010197.0E-2276178IPR003340B3 DNA binding domain
PfamPF023622.3E-2176176IPR003340B3 DNA binding domain
PROSITE profilePS5086312.30876178IPR003340B3 DNA binding domain
PfamPF065072.5E-28202282IPR010525Auxin response factor
PfamPF023093.8E-8508566IPR033389AUX/IAA domain
PROSITE profilePS5174526.165530611IPR000270PB1 domain
SuperFamilySSF542779.81E-13532606No hitNo description
PfamPF023092.2E-6573614IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MEQLEASTNQ ELNQRIPLLK LPTKILCRVV NVHLLAEQET DEVYAQITLV PESNQDEPMN  60
PDPCTAEPPR APVHSFSKVL TASDTSTHGG FSVLRKHAME CLPALDMSQP TPTQELVAKD  120
LHGYEWRFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDTF VFLRGDNGEL RVGVRRLARQ  180
ASSMPSSVIS SQSMHLGVLA TASHAVATQT LFVVYYKPRT SQFIISVNKY LEAMNRFSVG  240
MRLKMRFEGD DSAETDKRFS GTIVGVEDIS PHWVNSKWRS LKVQWDEPAA VPRPDRVSPW  300
EIEPFVASAS TPSVQPTMVK TKRPRPPSET PDVDTTSAAS VFWDAGLQQA DMAQKNVLAE  360
SKRNDSTGTW HHMQTDMNSK SNSGNAMLRN QTEGSWLSSP HSSCPSHLFQ DATDDSKSVS  420
AWPVSKPHSS RLNNDHVLDQ VDKESKVETA TSYRLFGIDL IDHSRNSPSV EKASAQAGNA  480
PKVTTEGCTS TLTRTDAGHL SDVPMASSKE RKQEQQQVSP KETQSKQICR SRTKVQMQGV  540
AVGRAVDLTM LDGYDQLINE LEEMFDIKGQ LQHRNKWEIV FTDDEGDMML VGDDPWPEFC  600
NMVRRIFICS SQDVKKMSCG SKLPISSVED GTVISSDTTE T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-146130549355Auxin response factor 1
4ldw_A1e-146130549355Auxin response factor 1
4ldw_B1e-146130549355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1321325KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN16369.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520962.10.0auxin response factor 9 isoform X1
RefseqXP_028224651.10.0auxin response factor 9-like
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A0B2Q8V00.0A0A0B2Q8V0_GLYSO; Auxin response factor
STRINGGLYMA03G17450.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]