PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN16438.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 215aa    MW: 24339.4 Da    PI: 5.1836
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN16438.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM88.61.1e-27141401128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekew..yfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                 lp+G+rF+P+de l  +yL+k++ +++l+  + i+++d+y++ Pw+Lp    ++  +w  +fF+  +++   ++ ++r + +g W++  + ++v  +++
  KHN16438.1  14 LPVGYRFDPSDEILAGYYLRKRIMAQPLPN-DLIQDCDVYQTVPWELPGGG-NKYLNWqrFFFHDLRTRVF-DNLNKREAGNGQWRTIEEAQDVELSND 109
                 799*************************99.99***************432.2233555488888877765.5677888899***************** PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                 ++v  +++L+f++++ +   k++W+mhe+rl
  KHN16438.1 110 QVVAKRNVLAFWEAKGNGFAKSNWLMHEFRL 140
                 *************999999**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-3111160IPR003441NAC domain
PROSITE profilePS5100532.63214160IPR003441NAC domain
PfamPF023651.3E-1415140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MEVLNPIEGK TYKLPVGYRF DPSDEILAGY YLRKRIMAQP LPNDLIQDCD VYQTVPWELP  60
GGGNKYLNWQ RFFFHDLRTR VFDNLNKREA GNGQWRTIEE AQDVELSNDQ VVAKRNVLAF  120
WEAKGNGFAK SNWLMHEFRL VSKSLPSMVS SVAVYRIFEK KEGRKGKKAK GSEGETSSSS  180
SSEEEVMDEA PIVIDFTMES CIGTGPPSPA TSENS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-151414015140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN16438.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0948870.0BT094887.1 Soybean clone JCVI-FLGm-6I22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028217397.11e-161NAC domain-containing protein 83-like
TrEMBLA0A0B2Q8T51e-159A0A0B2Q8T5_GLYSO; NAC domain-containing protein 2
STRINGGLYMA19G26950.11e-159(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134131127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.16e-22NAC domain containing protein 83
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]