PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN16526.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 419aa    MW: 47437.2 Da    PI: 6.0024
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN16526.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like65.78.3e-21158213155
     G2-like   1 kprlrWtp.eLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 k r+ W++ e H +F++a eqLGG++kA Pk+ile+mk +gLt+e+v+SHLQk R 
  KHN16526.1 158 KSRVIWAEeERHIKFLDAAEQLGGIDKAAPKRILEVMKDPGLTREQVASHLQKVRH 213
                 67999986268******************************************996 PP
2Response_reg73.49.2e-25181261109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl +d + +v+e ++q++++ +  +v + +++  al+ ++e +  +D+il+D++mp+mdG+e+l++ir e  ++p+iv++  ++ ++  +a+k Ga 
    KHN16526.1  18 VLAIDNDSTVLETVKQMCNECHH-QVITYSNALHALDRVREDRycVDVILIDVNMPNMDGHEFLQRIRMEI-DVPVIVMSLDDSTSTKMQAIKHGAC 112
                   7899***************9999.9999***************9************************988.************************* PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+  Kp ++++ ++
    KHN16526.1 113 DYWKKPLHEDQFRN 126
                   *******9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23007.3E-3315159No hitNo description
SuperFamilySSF521723.13E-3015142IPR011006CheY-like superfamily
SMARTSM004483.8E-2516128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011037.30217132IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.4E-2118126IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.26E-2419125No hitNo description
PROSITE profilePS512949.623155216IPR017930Myb domain
SuperFamilySSF466893.4E-11157216IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-19158213IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.4E-20160217IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MATTDEEVPT QFPARLRVLA IDNDSTVLET VKQMCNECHH QVITYSNALH ALDRVREDRY  60
CVDVILIDVN MPNMDGHEFL QRIRMEIDVP VIVMSLDDST STKMQAIKHG ACDYWKKPLH  120
EDQFRNMWMH VARKAWNANR VDMKSGSLEE KPQANKGKSR VIWAEEERHI KFLDAAEQLG  180
GIDKAAPKRI LEVMKDPGLT REQVASHLQK VRHQEKKKKN NSDEVRKSLP NTFQLTTTES  240
SVSAYGKIER QAFAVNGLVP CKTHTGIGTE LTSDLMPKEE QWHAKQGMTY DHPALSICPP  300
PHILNHHQSM MNVDEESGYG VWSPSAIHDT MRLRQVQEQE QQQMQMNFQS PCIFHDYTTT  360
PASASASASA SASSIPEQVQ GGYFSVPNTL ISPYSSRSDD SIHEESPENF GYDDESSSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3r0j_A2e-141714025147POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE REGULATOR PHOP
3r0j_B2e-141714025147POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE REGULATOR PHOP
5ed4_A2e-141714025147Response regulator
5ed4_B2e-141714025147Response regulator
5ed4_E2e-141714025147Response regulator
5ed4_F2e-141714025147Response regulator
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN16526.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358700.0AC235870.2 Glycine max clone GM_WBb0130P22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014634177.20.0two-component response regulator ORR21
TrEMBLA0A445JA800.0A0A445JA80_GLYSO; Two-component response regulator ORR21
STRINGGLYMA08G05150.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3563322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.16e-46response regulator 14
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]