PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN16571.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 252aa MW: 28246.1 Da PI: 5.4458

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN16571.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23	1.5e-07	143	190	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L+ ++P + k + a +L + ++Y++sLq KHN16571.1 143 SHSLAERVRRGKINEKLRCLQNIVPGC----YKTMGMAIMLDEIINYVQSLQ 190 8*************************8....355888999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.21E-9	137	194	No hit	No description
SuperFamily	SSF47459	6.94E-16	137	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.589	139	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-15	139	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.0E-5	143	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-7	145	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MAEFTADLQS LRFPFLDIDN MEIQNFMMPF SCESFLGSPE AEFPGNLLEE NFPALVQCVD 60 HNEVPVLVPI GSVKNEIHEG QKRKATDICE PSSANSTPAV SESGSKTKNS SGRGKRVKRN 120 SIEDKKPNEV VHVRAKRGQA TDSHSLAERV RRGKINEKLR CLQNIVPGCY KTMGMAIMLD 180 EIINYVQSLQ HQVEFLSMKL TAASTYYDLN SESDALETMQ RARASEVKEL GKCVREGSEE 240 VSCFEPTWPW PL

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN16571.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT136059	1e-134	BT136059.1 Lotus japonicus clone JCVI-FLLj-3K3 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003532505.1	0.0	transcription factor BEE 3
Refseq	XP_028242410.1	0.0	transcription factor BEE 3-like
Swissprot	Q8GWK7	2e-61	BEE3_ARATH; Transcription factor BEE 3
TrEMBL	A0A445J9X6	0.0	A0A445J9X6_GLYSO; Transcription factor BEE 3
TrEMBL	K7L4X5	0.0	K7L4X5_SOYBN; Uncharacterized protein
STRING	GLYMA08G04661.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3360	34	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73830.1	7e-64	BR enhanced expression 3

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]