PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN16575.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NAC

Protein Properties

Length: 313aa MW: 35310.5 Da PI: 8.5777

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN16575.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.4	2.7e-53	5	130	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGf+FhPtdeel+++yL +kv++ +++ ++++ vd++k+ePwdLp k++ +ekewyfFs +d+ky+tg r+nrat+sgyWk+tgkdke++ +g l KHN16575.1 5 LPPGFKFHPTDEELITYYLLRKVSDVDFTS-KAVAVVDLNKSEPWDLPGKASMGEKEWYFFSLKDRKYPTGLRTNRATESGYWKTTGKDKEIFG-GGVL 101 79***********************999.88***********988999************************************. PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g+kktLvfy grap+gek++Wvmheyrl KHN16575.1 102 IGMKKTLVFYMGRAPRGEKSNWVMHEYRL 130 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-63	3	151	IPR003441	NAC domain
PROSITE profile	PS51005	59.657	5	151	IPR003441	NAC domain
Pfam	PF02365	1.3E-28	6	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MEEKLPPGFK FHPTDEELIT YYLLRKVSDV DFTSKAVAVV DLNKSEPWDL PGKASMGEKE 60 WYFFSLKDRK YPTGLRTNRA TESGYWKTTG KDKEIFGGGV LIGMKKTLVF YMGRAPRGEK 120 SNWVMHEYRL ANKQPYRSSK EEWVICRVFQ KSSAPKKPQQ TSSSQPSQES PTSMVNEFGD 180 VDLPNLNSIA NSSSSFTNNI AYNINGDPSN AVNTNMNLTM NWPSGFLNPN LSVNSLLLKA 240 SQLRNTYQQR EAATSSDHHF ATYVPQGFSH NNTIGTEHHL MTPNLSATSS SSKALEYSCV 300 PQQEQPFNMD SIW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-57	5	157	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-57	5	157	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-57	5	157	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-57	5	157	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-57	5	157	20	174	NAC domain-containing protein 19
3swm_B	1e-57	5	157	20	174	NAC domain-containing protein 19
3swm_C	1e-57	5	157	20	174	NAC domain-containing protein 19
3swm_D	1e-57	5	157	20	174	NAC domain-containing protein 19
3swp_A	1e-57	5	157	20	174	NAC domain-containing protein 19
3swp_B	1e-57	5	157	20	174	NAC domain-containing protein 19
3swp_C	1e-57	5	157	20	174	NAC domain-containing protein 19
3swp_D	1e-57	5	157	20	174	NAC domain-containing protein 19
4dul_A	1e-57	5	157	17	171	NAC domain-containing protein 19
4dul_B	1e-57	5	157	17	171	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN16575.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028247097.1	0.0	NAC domain-containing protein 92-like
TrEMBL	A0A445J9W9	0.0	A0A445J9W9_GLYSO; Protein CUP-SHAPED COTYLEDON 2
STRING	GLYMA08G04610.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4946	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	3e-99	NAC domain containing protein 58

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]