PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN16637.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 177aa    MW: 19997.7 Da    PI: 6.0446
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN16637.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.46.9e-221157349
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                ++++  +qvtfskRr+g++KKA+ELS+LC+aeva+++fs+ ++ y +
  KHN16637.1 11 VKDSNTKQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNNPYSF 57
                5788999********************************99887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554557.19E-27174IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-31160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.96161IPR002100Transcription factor, MADS-box
CDDcd002654.91E-31273No hitNo description
PRINTSPR004042.1E-19323IPR002100Transcription factor, MADS-box
PfamPF003193.6E-241257IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MGRRKIEITE VKDSNTKQVT FSKRRTGLFK KANELSILCG AEVAIVVFSP GNNPYSFGHP  60
SVDVVADKFL KQEPKSNDVQ GTSIEVADMD RLNQQLSDVQ NEILEEQKKA AELNERLKQK  120
GVTQPFQTKE LQGSNLEIQK MKDCYDAIEV SEYMLLLAKE PVVGIPEQVA TQERRRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A2e-17179183MEF2 CHIMERA
6bz1_B2e-17179183MEF2 CHIMERA
6bz1_C2e-17179183MEF2 CHIMERA
6bz1_D2e-17179183MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN16637.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-84AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014634031.11e-128agamous-like MADS-box protein AGL29 isoform X1
RefseqXP_028243379.11e-128agamous-like MADS-box protein AGL29 isoform X1
TrEMBLA0A445J9C01e-117A0A445J9C0_GLYSO; Agamous-like MADS-box protein AGL29
STRINGGLYMA08G03830.11e-127(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G66656.11e-34AGAMOUS-like 91
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]