PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN16638.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 177aa    MW: 19956.9 Da    PI: 9.0913
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN16638.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.94.9e-221257449
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +++  +qvtfskRr+g++KKA+ELS+LC+aevav++fs+ ++ y +
  KHN16638.1 12 KDSNTKQVTFSKRRTGLFKKANELSILCGAEVAVVVFSPGNNPYSF 57
                678889********************************99887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.936161IPR002100Transcription factor, MADS-box
SMARTSM004324.1E-31160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-26174IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-19323IPR002100Transcription factor, MADS-box
PfamPF003193.2E-241257IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MVRRKIEITE LKDSNTKQVT FSKRRTGLFK KANELSILCG AEVAVVVFSP GNNPYSFGHP  60
SVDVVADKFL KQEPKSNDVQ GTSTEVADMD RLNQQLSDVQ NEILEEQKKA AELNERMKQK  120
GVTQLFQPKE LQGSNLEIQK MKDCYDAIEV SEYMLLLAKE PVVGIPKQVA TKKRRGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A2e-15179183MEF2 CHIMERA
6bz1_B2e-15179183MEF2 CHIMERA
6bz1_C2e-15179183MEF2 CHIMERA
6bz1_D2e-15179183MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN16638.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150342e-77AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028243636.11e-128agamous-like MADS-box protein AGL29
TrEMBLA0A445J9C01e-111A0A445J9C0_GLYSO; Agamous-like MADS-box protein AGL29
TrEMBLI1KPX31e-113I1KPX3_SOYBN; Uncharacterized protein
STRINGGLYMA08G03830.11e-118(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G66656.14e-32AGAMOUS-like 91
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]