PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN16640.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 104aa    MW: 11513.2 Da    PI: 10.1647
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN16640.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.72e-201357549
                SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +   rqvtfskRr+g +KKA+ELS+LCd+e+a+++fs  +k y +
  KHN16640.1 13 DPNMRQVTFSKRRTGPFKKANELSILCDVEIAIVVFSIGNKPYSF 57
                6678*********************************98887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.577161IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.11E-24175IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-27160IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-18323IPR002100Transcription factor, MADS-box
PfamPF003192.6E-221257IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-182338IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-183859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MGHRKIEIAI VKDPNMRQVT FSKRRTGPFK KANELSILCD VEIAIVVFSI GNKPYSFGHP  60
CVDVVATKFL QLQQAANSSN AKQIDAQGRN NPSNELGGMD RLNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-17178178MEF2 CHIMERA
6byy_B7e-17178178MEF2 CHIMERA
6byy_C7e-17178178MEF2 CHIMERA
6byy_D7e-17178178MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN16640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006586329.17e-73agamous-like MADS-box protein AGL29
RefseqXP_028247370.17e-73agamous-like MADS-box protein AGL29
SwissprotO647032e-26AGL29_ARATH; Agamous-like MADS-box protein AGL29
TrEMBLK7L4Q51e-65K7L4Q5_SOYBN; Uncharacterized protein
STRINGGLYMA08G03793.12e-66(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.18e-29AGAMOUS-like 29
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]