PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN16871.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family BBR-BPC
Protein Properties Length: 317aa    MW: 35553.3 Da    PI: 9.7176
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN16871.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind339.21e-10313171301
   GAGA_bind   1 mdddgsre..rnkg.yye..............pa.aslkenlglqlmssiaerdaki..rernlalsekkaavaerdmaflqrdkalaernkalverdn 79 
                 mdd  ++e  r+k  +y+              ++ ++l   +++++ s++aer+a+i   e ++a+sek++a+a+rd a +qrd+ala+r++al+erdn
  KHN16871.1   1 MDDGHQHEnsRHKMeFYRgarslwntdsqhqvKEpNALV--MNKKIRSIMAERQAAIleIELETAISEKNEALAARDAAIQQRDEALAQRDNALLERDN 97 
                 666555445799887888999999999876653335666..99**************76677889********************************** PP

   GAGA_bind  80 kllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak...kkkkkseksk 175
                 +l+al+ ++ns   + p+g ++  g+k ++++ + + +++++ a+ ++++ + +a p++  ++ea ++++ k+++++k+  +k +k   k+kk +e+ +
  KHN16871.1  98 ALAALQSRNNS--VNFPFGGGIQCGSKRMHHSSN-HLSNMTEAAYSTKDMIIRDASPVTVIPSEAVNSHQAKRTKQNKVINSKASKppcKVKKMGEDLN 193
                 *******9998..66799999999******8887.669********************99999999999888888887766665554468888888887 PP

   GAGA_bind 176 kkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaa 274
                 ++ ++e+  ++ ++e++++d++ln v++De+ +PvPvC+CtG++rqCYkWGnGGWqS+CCttt+S+yPLP+ +++r+aRi+grKmS+++f++lL++L +
  KHN16871.1 194 RQASSEG--TKIRSEWDKQDVGLNLVAFDETIMPVPVCTCTGIPRQCYKWGNGGWQSSCCTTTLSMYPLPQLPNKRHARIGGRKMSGSVFTRLLSRLVS 290
                 7777777..67**************************************************************************************** PP

   GAGA_bind 275 eGydlsnpvDLkdhWAkHGtnkfvtir 301
                 eG+dls p+DLk++WA+HGtn+++ti+
  KHN16871.1 291 EGHDLSIPLDLKEYWARHGTNRYITIK 317
                 **************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062174.5E-981317IPR010409GAGA-binding transcriptional activator
SMARTSM012261.8E-1371317IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MDDGHQHENS RHKMEFYRGA RSLWNTDSQH QVKEPNALVM NKKIRSIMAE RQAAILEIEL  60
ETAISEKNEA LAARDAAIQQ RDEALAQRDN ALLERDNALA ALQSRNNSVN FPFGGGIQCG  120
SKRMHHSSNH LSNMTEAAYS TKDMIIRDAS PVTVIPSEAV NSHQAKRTKQ NKVINSKASK  180
PPCKVKKMGE DLNRQASSEG TKIRSEWDKQ DVGLNLVAFD ETIMPVPVCT CTGIPRQCYK  240
WGNGGWQSSC CTTTLSMYPL PQLPNKRHAR IGGRKMSGSV FTRLLSRLVS EGHDLSIPLD  300
LKEYWARHGT NRYITIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN16871.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532442.10.0protein BASIC PENTACYSTEINE4
RefseqXP_003532443.10.0protein BASIC PENTACYSTEINE4
RefseqXP_028245019.10.0protein BASIC PENTACYSTEINE4-like
RefseqXP_028245020.10.0protein BASIC PENTACYSTEINE4-like
SwissprotQ8S8C61e-126BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A445J8460.0A0A445J846_GLYSO; Protein BASIC PENTACYSTEINE4 isoform A
TrEMBLI1KP400.0I1KP40_SOYBN; Uncharacterized protein
STRINGGLYMA08G01240.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69743348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-129basic pentacysteine 4
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]