PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN16948.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NF-YB

Protein Properties

Length: 221aa MW: 25393 Da PI: 6.4195

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN16948.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	178.4	6.6e-56	45	140	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +eqdrflPianv+rimkkv+P n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlGfedyveplk+yl+ky+e+egek KHN16948.1 45 KEQDRFLPIANVGRIMKKVIPPNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDVIWAITTLGFEDYVEPLKTYLQKYKEIEGEK 140 89*******************************************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.6E-54	38	167	IPR009072	Histone-fold
SuperFamily	SSF47113	3.14E-41	47	169	IPR009072	Histone-fold
Pfam	PF00808	2.3E-27	50	114	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.9E-20	78	96	No hit	No description
PROSITE pattern	PS00685	0	81	97	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.9E-20	97	115	No hit	No description
PRINTS	PR00615	1.9E-20	116	134	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MEDESHNNIL PNGFNTGSTE SPCLKTSTMT TQHNNNNNHQ NHSNKEQDRF LPIANVGRIM 60 KKVIPPNGKI SKDAKETVQE CVSEFISFVT GEASDKCQRE KRKTINGDDV IWAITTLGFE 120 DYVEPLKTYL QKYKEIEGEK LNIPKQLRSE QRLHQHQQNH NNNHDENNNQ PFNGAYASSN 180 LISQPPYVPT DQKFSLPFSP NSIQNQLRQQ EQIDSVGHWY E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_B	5e-45	43	135	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	5e-45	43	135	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN16948.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003532355.1	1e-165	nuclear transcription factor Y subunit B-3
Refseq	XP_028244070.1	1e-165	nuclear transcription factor Y subunit B-3-like
Swissprot	Q9SIT9	8e-68	NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBL	A0A0R0IEV2	1e-164	A0A0R0IEV2_SOYBN; Uncharacterized protein
TrEMBL	A0A445J7R1	1e-164	A0A445J7R1_GLYSO; Nuclear transcription factor Y subunit B-7
STRING	GLYMA08G00330.2	1e-162	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13249	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G13570.1	6e-67	nuclear factor Y, subunit B7

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]