PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN17093.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 507aa MW: 56678.5 Da PI: 6.375

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN17093.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.1	8.4e-07	261	282	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H KHN17093.1 261 FCTICGKGFKRDANLRMHMRGH 282 6*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.69E-5	259	282	No hit	No description
PROSITE profile	PS50157	11.489	260	287	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0026	260	282	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.7E-5	260	284	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12874	0.001	261	282	No hit	No description
PROSITE pattern	PS00028	0	262	282	IPR007087	Zinc finger, C2H2
SMART	SM00355	53	309	342	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	21	347	369	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010044	Biological Process	response to aluminum ion
GO:0010447	Biological Process	response to acidic pH
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence Send to blast
MDPKGSLCAK NCTRTSSLTS PGNGLQTNLS SDPPSFYGVR IESPFKEFIQ PSPPTQSVLP 60 GESNADIDIP DQENCPLSNS SHTSKLQDWN PSAMLNNLSF LEEKIHQLQD LVHVIVNKKC 120 QPFGQPHELV TQEQQLITAD LTSIIVQLIS TAGSLLPSVR HTLTNTNPLV GQLDQLHGIN 180 LPFGSEPSSG IRPQNNSGNK LFDQSTQNDL PNKLEMEQNY NMEEHEPKDE EDADEGENLP 240 PGSYEILQLE KEEILAPHTH FCTICGKGFK RDANLRMHMR GHGDKYKTPA ALAKPHKETG 300 SEPKLIKRYS CPYAGCKRNK DHKKFQPLKT ILCVKNHYKR THCDKSYTCS RCNTKKFSVM 360 ADLKTHEKHC GKDKWLCSCG TTFSRKDKLF GHIALFQGHT PAIPLDETKG VAEPPDIQNR 420 ESNNKVESIN FCFGSNPSSE NVVQNIMDMK GNIDDPMNYF SSLNFEGCNF GAFNEFSQPP 480 FEDSEASFSF PMSGSYNYAP KFDSDNL

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence Send to blast

MDPKGSLCAK NCTRTSSLTS PGNGLQTNLS SDPPSFYGVR IESPFKEFIQ PSPPTQSVLP  60
GESNADIDIP DQENCPLSNS SHTSKLQDWN PSAMLNNLSF LEEKIHQLQD LVHVIVNKKC  120
QPFGQPHELV TQEQQLITAD LTSIIVQLIS TAGSLLPSVR HTLTNTNPLV GQLDQLHGIN  180
LPFGSEPSSG IRPQNNSGNK LFDQSTQNDL PNKLEMEQNY NMEEHEPKDE EDADEGENLP  240
PGSYEILQLE KEEILAPHTH FCTICGKGFK RDANLRMHMR GHGDKYKTPA ALAKPHKETG  300
SEPKLIKRYS CPYAGCKRNK DHKKFQPLKT ILCVKNHYKR THCDKSYTCS RCNTKKFSVM  360
ADLKTHEKHC GKDKWLCSCG TTFSRKDKLF GHIALFQGHT PAIPLDETKG VAEPPDIQNR  420
ESNNKVESIN FCFGSNPSSE NVVQNIMDMK GNIDDPMNYF SSLNFEGCNF GAFNEFSQPP  480
FEDSEASFSF PMSGSYNYAP KFDSDNL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269\|PubMed:17535918, ECO:0000269\|PubMed:18826429, ECO:0000269\|PubMed:19321711, ECO:0000269\|PubMed:23935008}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00196	ampDAP	Transfer from AT1G34370	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN17093.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269\|PubMed:17535918}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU127298	0.0	EU127298.1 Glycine max C2-H2 zinc finger protein (STOP1) mRNA, complete cds.
GenBank	EU418733	0.0	EU418733.1 Glycine max C2-H2 zinc finger protein (STOP1) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028184561.1	0.0	protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
Swissprot	Q9C8N5	1e-177	STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBL	A0A445IQX8	0.0	A0A445IQX8_GLYSO; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
STRING	GLYMA10G35940.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5340	32	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-180	C2H2 family protein

Publications ? help Back to Top
Kobayashi Y, et al. Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions. Plant Physiol., 2013. 163(1): p. 180-92 [PMID:23839867] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Yokosho K,Yamaji N,Ma JF Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench). Plant Cell Physiol., 2014. 55(12): p. 2077-91 [PMID:25273892] Geng X, et al. LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis. Plant J., 2017. 90(3): p. 491-504 [PMID:28181322] Balzergue C, et al. Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation. Nat Commun, 2017. 8: p. 15300 [PMID:28504266] Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation. Front Plant Sci, 2017. 8: p. 822 [PMID:28567051] Jiang F, et al. Identification and characterization of suppressor mutants of stop1. BMC Plant Biol., 2017. 17(1): p. 128 [PMID:28738784] Daspute AA, et al. Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms. Front Plant Sci, 2017. 8: p. 1358 [PMID:28848571] Sharma A,Wai CM,Ming R,Yu Q Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis. Genome Biol Evol, 2017. 9(9): p. 2170-2190 [PMID:28922793] Zhang Y, et al. The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis. Front Plant Sci, 2018. 9: p. 118 [PMID:29491872]