PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN17140.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 589aa    MW: 64586.8 Da    PI: 7.8241
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN17140.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3741.7e-23100201199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f k+lt+sd+++ g +++p+ +ae++        +++ +  t++ +d +g+ W++++iyr++++r++lt+GW++Fv++++L +gD++vF   + +++ l
  KHN17140.1 100 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNQKRLVAGDSIVFL--RAENGDL 194
                 89****************************986445444..8************************************************..4488999 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +v+++r+
  KHN17140.1 195 CVGIRRA 201
                 ****997 PP
2Auxin_resp1132.7e-37259341283
  Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 ++ a ++ +FevvY+Pras++eF+vk++ v++a++++++ GmRfkm fetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+
  KHN17140.1 259 VTCAVNGRPFEVVYYPRASSPEFCVKASVVKAAMQIQWCSGMRFKMPFETEDSSRISWfMGTISSVQVADPIRWPDSPWRLLQ 341
                 6678899**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.2E-3892203IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-3093201IPR015300DNA-binding pseudobarrel domain
CDDcd100171.96E-2299200No hitNo description
SMARTSM010191.8E-20100202IPR003340B3 DNA binding domain
PfamPF023621.3E-21100201IPR003340B3 DNA binding domain
PROSITE profilePS5086313.253100202IPR003340B3 DNA binding domain
PfamPF065077.7E-33259341IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MVQMPPLNTK VFYFPQGHAE HAHGKVEYFG KNHQTRVPPL IPCRLSAMKY MADPDTDEVY  60
VKMRLTPLRE HELLDSQDDC FLGNTNSGGV ENQEKPPTSF AKTLTQSDAN NGGGFSVPRY  120
CAETIFPRLD YSAEPPVQTI IAKDMHGQCW KFRHIYRGTP RRHLLTTGWS NFVNQKRLVA  180
GDSIVFLRAE NGDLCVGIRR AKKGIGGGTE FSSGWNNPLF GGGGGFLCGS ESSFVSGAKS  240
GGDHEIVGRV APESVVEAVT CAVNGRPFEV VYYPRASSPE FCVKASVVKA AMQIQWCSGM  300
RFKMPFETED SSRISWFMGT ISSVQVADPI RWPDSPWRLL QVVWDEPDLL QNVKCVNPWL  360
VELVSNMPTF NLSAYSPPRK KQRFLQDPYF QVINQLPMPS FSSNLLNYTN SLCTIQDSNS  420
SGGIQGARHA QFGLSPSDFP FNKLPADMLL GGFSRLDHAA AQPIRPPCGT YKNNTTTKAN  480
VGISCLLTVG NPGQNFKESN ETKAPHILLF GKLIQTEQKS SNTSSANTNG NSVSEGNSHK  540
TSNASDGLGS GLHQGSPIEN NSDGGSPWYK DQHKSDLGTD NVNTLCIAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-70136263388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN17140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028185517.10.0auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A445IQJ90.0A0A445IQJ9_GLYSO; Auxin response factor
STRINGGLYMA10G35481.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]