PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN17220.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 267aa    MW: 29573.3 Da    PI: 9.3426
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN17220.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.38.5e-14126170347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE+ +++++ ++lG+g+W+ I++++  +Rt+ q+ s+ qk+
       KHN17220.1 126 PWSEEEHRKFLEGLEKLGKGDWRGISKKFVITRTPSQVASHAQKF 170
                      8*****************************99***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.525119175IPR017930Myb domain
SuperFamilySSF466891.2E-16120176IPR009057Homeodomain-like
TIGRFAMsTIGR015575.6E-18122174IPR006447Myb domain, plants
SMARTSM007171.2E-11123173IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-11123166IPR009057Homeodomain-like
CDDcd001671.45E-10126171No hitNo description
PfamPF002493.0E-12126169IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MRMGRKCSYC GNFGHNSRTC NTHKRGLKLF GVQLDLCSSS SSSSLPLTSP CTSSSSSTPF  60
DIMKRSLSMD YLVSSRIISP SYNFLLGGGA DENSSDKTIT DGYIASVGGG GLTSTTHHQE  120
RKKGVPWSEE EHRKFLEGLE KLGKGDWRGI SKKFVITRTP SQVASHAQKF FLRQTSFNQR  180
KRRRSLFDME RDETTTLEQF NTCFKASGQF GSPSGTIITC PQWVSCNHSV LNWATTSTNY  240
THQSASPDLE LKLAVPILTE PCGRTEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179183RKRRR
2179184RKRRRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN17220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003545373.10.0transcription factor MYBS3
RefseqXP_028200533.10.0transcription factor MYBS3-like
TrEMBLA0A445H3X10.0A0A445H3X1_GLYSO; Transcription factor MYBS3
TrEMBLK7M5V80.0K7M5V8_SOYBN; Uncharacterized protein
STRINGGLYMA14G10740.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32133271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.11e-44MYB_related family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]