PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN17282.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HB-other
Protein Properties Length: 74aa    MW: 8870.94 Da    PI: 4.7537
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN17282.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.1e-182071253
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
    Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53
                +kR   t+ ql++Le++++++ yp++e++  LA++lgLte+q++ WF+ rR 
  KHN17282.1 20 KKRKLKTPAQLKALEDFYNEHEYPTEEMKLVLAEELGLTEKQISGWFCHRRL 71
                89*************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-20570IPR009057Homeodomain-like
SuperFamilySSF466896.84E-171472IPR009057Homeodomain-like
PROSITE profilePS5007115.4351674IPR001356Homeobox domain
SMARTSM003899.3E-101874IPR001356Homeobox domain
PfamPF000461.7E-152071IPR001356Homeobox domain
CDDcd000861.76E-132070No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MEESSELQSE ENKVSNEKNK KRKLKTPAQL KALEDFYNEH EYPTEEMKLV LAEELGLTEK  60
QISGWFCHRR LEDW
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN17282.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003519513.13e-35uncharacterized protein LOC100805913 isoform X1
RefseqXP_006575626.12e-35uncharacterized protein LOC100805913 isoform X2
RefseqXP_028219628.12e-35uncharacterized protein LOC114401325 isoform X1
RefseqXP_028219637.13e-35uncharacterized protein LOC114401325 isoform X2
SwissprotF4HY561e-12RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBLA0A0B2QBX23e-46A0A0B2QBX2_GLYSO; Uncharacterized protein
STRINGGLYMA02G44910.11e-34(Glycine max)
STRINGGLYMA04G15260.11e-36(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57923051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.14e-22HB-other family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]