PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN17315.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 199aa    MW: 21892 Da    PI: 8.0474
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN17315.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.81.3e-314107199
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+++e 
  KHN17315.1   4 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRILNPIYGSVGLLWSGSWQLCQAAVEN 102
                 6***********************************************************************************************999 PP

      DUF260  95 allke 99 
                 +l ++
  KHN17315.1 103 VLKGA 107
                 88765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.9273109IPR004883Lateral organ boundaries, LOB
PfamPF031954.1E-254102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLVNAGPEH  60
LRPAIFRSLL YEACGRILNP IYGSVGLLWS GSWQLCQAAV ENVLKGAPIT PITSENRSGS  120
HDSTLSHQSE AANAVESESM LSAETPETSI LFREEPETNP KRVSDDVGLE LTLGFEPVSR  180
ARPVVPVKKR RIELKNFSD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN17315.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-72AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009357119.13e-90PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9M8863e-78LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A0B2Q7W01e-144A0A0B2Q7W0_GLYSO; LOB domain-containing protein 41
STRINGXP_009357119.11e-89(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.11e-74LOB domain-containing protein 40
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]