PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN17368.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NAC

Protein Properties

Length: 401aa MW: 45037.8 Da PI: 8.849

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN17368.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.1	1.4e-52	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 + pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdL k+++++ekewyfF++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ +++ KHN17368.1 15 MLPGFRFHPTDEELVGFYLKRKIQQRPLSI-ELIKQLDIYKYDPWDLSKMATTGEKEWYFFCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSeGSK 112 579*************************.89**********98888899***********************************95667 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +glkk+Lvfykgra kg ktdW+mhe+rl KHN17368.1 113 CIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 142 7*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.09E-57	14	174	IPR003441	NAC domain
PROSITE profile	PS51005	56.938	15	174	IPR003441	NAC domain
Pfam	PF02365	2.5E-26	17	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MEERNHDGEK LDEVMLPGFR FHPTDEELVG FYLKRKIQQR PLSIELIKQL DIYKYDPWDL 60 SKMATTGEKE WYFFCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSEG SKCIGLKKSL 120 VFYKGRAAKG IKTDWMMHEF RLPSLTHPSS DPKKYMDKTI PANESWAICR IFKKTNATAQ 180 RALSHSWVSP LPETTTTSDH RDGNQLCQAN MPFTKKTSLA SQFYTFNHNE SQHSTTTSTT 240 PCPLDVVASY NKPLINPLML YKPSDRLPFS NGDLISSGVI FSSLETSTTS AKSSTDASSL 300 LLSTSSSVLG DFSKTSEGTI TTNFGGLQEH GNGYQIPLLR DNMQGNFGNH DDNALGKIPN 360 VNVVPRVGDQ QLETVRSIGF PFNIGDAWKP NMLWDTSSLS L

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MEERNHDGEK LDEVMLPGFR FHPTDEELVG FYLKRKIQQR PLSIELIKQL DIYKYDPWDL  60
SKMATTGEKE WYFFCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSEG SKCIGLKKSL  120
VFYKGRAAKG IKTDWMMHEF RLPSLTHPSS DPKKYMDKTI PANESWAICR IFKKTNATAQ  180
RALSHSWVSP LPETTTTSDH RDGNQLCQAN MPFTKKTSLA SQFYTFNHNE SQHSTTTSTT  240
PCPLDVVASY NKPLINPLML YKPSDRLPFS NGDLISSGVI FSSLETSTTS AKSSTDASSL  300
LLSTSSSVLG DFSKTSEGTI TTNFGGLQEH GNGYQIPLLR DNMQGNFGNH DDNALGKIPN  360
VNVVPRVGDQ QLETVRSIGF PFNIGDAWKP NMLWDTSSLS L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-52	17	181	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-52	17	181	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-52	17	181	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-52	17	181	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-52	17	181	22	174	NAC domain-containing protein 19
3swm_B	4e-52	17	181	22	174	NAC domain-containing protein 19
3swm_C	4e-52	17	181	22	174	NAC domain-containing protein 19
3swm_D	4e-52	17	181	22	174	NAC domain-containing protein 19
3swp_A	4e-52	17	181	22	174	NAC domain-containing protein 19
3swp_B	4e-52	17	181	22	174	NAC domain-containing protein 19
3swp_C	4e-52	17	181	22	174	NAC domain-containing protein 19
3swp_D	4e-52	17	181	22	174	NAC domain-containing protein 19
4dul_A	3e-52	17	181	19	171	NAC domain-containing protein 19
4dul_B	3e-52	17	181	19	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN17368.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	1e-169	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014625908.1	0.0	protein FEZ
Refseq	XP_028213812.1	0.0	protein FEZ-like
Swissprot	Q9ZVH0	1e-110	FEZ_ARATH; Protein FEZ
TrEMBL	A0A0B2QBF1	0.0	A0A0B2QBF1_GLYSO; Protein FEZ
TrEMBL	I1N149	0.0	I1N149_SOYBN; Uncharacterized protein
STRING	GLYMA18G15020.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2013	34	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-111	NAC family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]