PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN17433.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 240aa    MW: 26639.1 Da    PI: 9.5043
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN17433.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.94.7e-1371124148
                      TSSS-HHHHHHHHHHHHHTTTT.......-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.......tWktIartmgkgRtlkqcksrwqkyl 48 
                      +g++T+eE  l+++++ +lG++        W+  ar ++ gRt++ +k++w ++l
       KHN17433.1  71 KGKFTEEESNLIIHLHSLLGNKnehkpssLWSQMARSLP-GRTDNKIKNYWKSHL 124
                      79*************************************.***********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.07E-1752131IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-95277IPR009057Homeodomain-like
PROSITE profilePS5129416.69666128IPR017930Myb domain
SMARTSM007174.6E-1070126IPR001005SANT/Myb domain
PfamPF002491.2E-1171124IPR001005SANT/Myb domain
CDDcd001672.45E-1073124No hitNo description
Gene3DG3DSA:1.10.10.602.3E-1878125IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MNSSSTRSTF MAKAIGNPFP KQQISVDYYD KTSILMEKVP ITFMKVHPGL LRCGKSCRLR  60
WTNYSVPDVK KGKFTEEESN LIIHLHSLLG NKNEHKPSSL WSQMARSLPG RTDNKIKNYW  120
KSHLKRYLTA LGIDPVTHKP FKDATTTPPT NNSQVSMVTT TSKNGTNNTD SNIPRIYYFN  180
VFLNSKVQIS ADHDCSADGA DSNGSSGVTI EEASPQVNLE LSIAPPSQPE DASMKETLNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-175212640106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN17433.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014631582.11e-96myb-related protein 330-like
RefseqXP_028231009.11e-96myb-related protein 330-like
TrEMBLA0A0B2QBL11e-179A0A0B2QBL1_GLYSO; Myb-related protein 308
STRINGGLYMA08G00810.27e-89(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.13e-42myb domain protein 4
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]