PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN17564.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CO-like
Protein Properties Length: 359aa    MW: 39046.7 Da    PI: 5.9189
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN17564.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.96.4e-062060438
    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                + C+ ++   + lfC+ ++ +lC  C +++H +      H+
  KHN17564.1 20 KPCDSCKLASAALFCHLDSAFLCIACDSNIHCSnklasrHE 60
                68******99*********************7656666676 PP
2zf-B_box17.58.3e-066290331
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedCll 31
                 ++C+ +e+ +++  C+ +   lC +C +
  KHN17564.1 62 VWMCEVCEQAPASVTCKADAAALCVTCDS 90
                689************************75 PP
3CCT69.87.1e-24287330144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  KHN17564.1 287 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 330
                 9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.1E-71764IPR000315B-box-type zinc finger
PROSITE profilePS501199.7271764IPR000315B-box-type zinc finger
CDDcd000219.94E-72164No hitNo description
PROSITE profilePS501198.5896088IPR000315B-box-type zinc finger
CDDcd000211.25E-56391No hitNo description
SMARTSM003362.96595IPR000315B-box-type zinc finger
PfamPF062035.4E-18287329IPR010402CCT domain
PROSITE profilePS5101716.787287329IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGIERGGFKG FRSAWSVPPK PCDSCKLASA ALFCHLDSAF LCIACDSNIH CSNKLASRHE  60
RVWMCEVCEQ APASVTCKAD AAALCVTCDS DMAPFFDSAE SIVKASATAS FGFVVPSDDG  120
AASDVFAPDD SDSAAWLIPN PNFGSKLMDA PEIKSKEIFF SEMDPFLDFD YSNSFQNNNS  180
AGNDSVVPVQ KPSLAPPLIN NHHHHQSETC FDVDFCRSKL SSFNYPSNSL SQSVSSSSLD  240
VGVVPDGNTV SDMSYSFGRN SSDSSGIVVV SGNSVGQGAT QLCGMDREAR VLRYREKRKN  300
RKFEKTIRYA SRKAYAETRP RIKGRFAKRT EIDSDVERLY SPGPAVLMLD TPYGVVPSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN17564.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ8642620.0GQ864262.1 Glycine max CONSTANS-like zinc finger protein (COL8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001239972.10.0zinc finger protein CONSTANS-LIKE 5-like
RefseqXP_028210486.10.0zinc finger protein CONSTANS-LIKE 5-like
SwissprotQ9FHH81e-103COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A445G2Z20.0A0A445G2Z2_GLYSO; Zinc finger protein CONSTANS-LIKE 5
TrEMBLD0EP030.0D0EP03_SOYBN; CONSTANS-like zinc finger protein
STRINGGLYMA17G07420.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.13e-93CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]