PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN17635.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 248aa    MW: 27996.8 Da    PI: 5.0555
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN17635.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.31.5e-1460103755
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   Er+RR+++N++++ Lr ++P+      +K++Ka+i + A+eYI++L+
  KHN17635.1  60 VSERNRRKKLNDRLFALRAVVPNI-----TKMDKASIIKDAIEYIQHLH 103
                 57*********************7.....7*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-1752117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.20253102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.52E-1356107No hitNo description
SMARTSM003531.4E-1559108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-1759117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-1260102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MENIGEEYGY WPENDMLFQN EDLGSWAIMD EAALSGSGYY DSSSPDGTGA SSSVASKNIV  60
SERNRRKKLN DRLFALRAVV PNITKMDKAS IIKDAIEYIQ HLHDQEKRIQ AEILDLESGN  120
KLKNPTYEFD QDLPILLRSK KKRTEQLFDS VSSRNSPIEI IDLRVTYMGE KTFVVSLTCS  180
KRTDTMVKLC AVFESLKLKV ITANITSFSG TLLKTVFIQA DEEERDFLHI KIQTAISALN  240
DPLSPMSI
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN17635.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0932130.0BT093213.1 Soybean clone JCVI-FLGm-17A23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028208608.10.0transcription factor bHLH35-like
SwissprotQ2HIV92e-84BH035_ARATH; Transcription factor bHLH35
TrEMBLI1MSK80.0I1MSK8_SOYBN; Uncharacterized protein
STRINGGLYMA17G06610.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-75bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]