PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN17656.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 228aa    MW: 25893.9 Da    PI: 10.2983
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN17656.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox597.8e-19111165256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ +++k+q   Le+ F+++++++  +++ LA++l+L++rqV vWFqNrRa+ k
  KHN17656.1 111 RKKLRLSKDQSSMLENSFKQHSTLNPVQKQALADQLNLKTRQVEVWFQNRRARTK 165
                 677889***********************************************98 PP
2HD-ZIP_I/II108.84e-35111199189
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                  +kk+rlsk+q+++LE+sF+++++L+p +K++la +L+l++rqv+vWFqnrRARtk+kq+E++ e Lk+++++l++en+rL+ke +eLr+
   KHN17656.1 111 RKKLRLSKDQSSMLENSFKQHSTLNPVQKQALADQLNLKTRQVEVWFQNRRARTKLKQTEVNRELLKKHCQNLSDENKRLKKELQELRA 199
                  69*************************************************************************************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.84E-1898168IPR009057Homeodomain-like
PROSITE profilePS5007116.649107167IPR001356Homeobox domain
SMARTSM003892.1E-16109171IPR001356Homeobox domain
PfamPF000463.9E-16111165IPR001356Homeobox domain
CDDcd000865.36E-14111168No hitNo description
Gene3DG3DSA:1.10.10.601.1E-17111165IPR009057Homeodomain-like
PROSITE patternPS000270142165IPR017970Homeobox, conserved site
SMARTSM003407.7E-15167211IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MLIFLKHDMN LNVGTHLSRQ RKSQGKCIAG LCLGLGLGLG SGHVPKKNKQ KENQAVVCLD  60
LAFELCPKGE KAVNNVNHHH DKVERISLER IHDYPNEKST DSDNSNNNGC RKKLRLSKDQ  120
SSMLENSFKQ HSTLNPVQKQ ALADQLNLKT RQVEVWFQNR RARTKLKQTE VNRELLKKHC  180
QNLSDENKRL KKELQELRAV KVGPSPPCIQ LSKTATLTMC SLCEKLVN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159167RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN17656.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311690.0KT031169.1 Glycine max clone HN_CCL_118 homeodomain/HOMEOBOX transcription factor (Glyma13g00310.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028210015.11e-146homeobox-leucine zipper protein HAT22-like
SwissprotP466657e-47HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A445G2F41e-145A0A445G2F4_GLYSO; Homeobox-leucine zipper protein HAT14
STRINGGLYMA17G06380.11e-144(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.15e-49homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]