PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN17702.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NF-YA

Protein Properties

Length: 213aa MW: 22992.9 Da PI: 9.5989

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN17702.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	105.5	4.6e-33	73	129	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RRq+Rakle+++kl +ksrkpylheSRh+hAl+R RgsgGrF KHN17702.1 73 DGPIYVNAKQYHGILRRRQSRAKLEAQNKL-IKSRKPYLHESRHRHALNRVRGSGGRF 129 57**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.4E-36	71	132	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.834	72	132	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.7E-28	75	129	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	8.0E-25	75	97	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	77	97	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	8.0E-25	106	129	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MKPFLSNHTD SMYNCSQVGC SHPMAHTSYP CGDPYFGSSI VAYGPQAINQ QMVPQMLGLA 60 STRIALPVDL AEDGPIYVNA KQYHGILRRR QSRAKLEAQN KLIKSRKPYL HESRHRHALN 120 RVRGSGGRFL SAKQLPQSNA ELVTDAYQKK DASEAENHPS STGENASITF TAISALTSMS 180 SNSVNFPNMA GSSQCSGGLT FGAGALQCTS VGR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-23	73	134	2	63	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN17702.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT096576	0.0	BT096576.1 Soybean clone JCVI-FLGm-15L7 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001240022.1	1e-159	nuclear transcription factor Y subunit A-19
Refseq	XP_006600160.1	1e-159	nuclear transcription factor Y subunit A-19 isoform X1
Refseq	XP_014624789.1	1e-159	nuclear transcription factor Y subunit A-19 isoform X1
Refseq	XP_028210333.1	1e-159	nuclear transcription factor Y subunit A-7-like
Refseq	XP_028210334.1	1e-159	nuclear transcription factor Y subunit A-7-like
Swissprot	Q9LNP6	9e-38	NFYA8_ARATH; Nuclear transcription factor Y subunit A-8
TrEMBL	A0A445G2R5	1e-158	A0A445G2R5_GLYSO; Nuclear transcription factor Y subunit A-3 isoform B
TrEMBL	C6TG32	1e-158	C6TG32_SOYBN; Uncharacterized protein
STRING	GLYMA17G05920.1	1e-158	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6949	31	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17590.4	4e-40	nuclear factor Y, subunit A8

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Djami-Tchatchou AT,Ntushelo K Expression Profile of Stress-responsive Arabidopsis thaliana miRNAs and their Target Genes in Response to Inoculation with Pectobacterium carotovorum subsp. carotovorum. Pak. J. Biol. Sci., 2017. 20(3): p. 147-153 [PMID:29023006]