PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN17851.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 299aa    MW: 34711 Da    PI: 8.1986
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN17851.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-082671346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      WT eE +++  a + + ++   +W ++a++++ g+t ++++  ++ 
       KHN17851.1 26 EWTREENKKFESALAIYDKDtpdRWLRVAAMLP-GKTVYDVIKQYRE 71
                     6********************************.********99986 PP
2Myb_DNA-binding42.31.8e-13126170347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+r +  ++t+ q+ s+ qky
       KHN17851.1 126 PWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKY 170
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.712276IPR017884SANT domain
SMARTSM007176.0E-92375IPR001005SANT/Myb domain
CDDcd001671.06E-62672No hitNo description
PfamPF002492.0E-62671IPR001005SANT/Myb domain
SuperFamilySSF466891.79E-112679IPR009057Homeodomain-like
PROSITE profilePS5129419.353119175IPR017930Myb domain
SuperFamilySSF466892.97E-16121175IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-17122174IPR006447Myb domain, plants
SMARTSM007175.6E-11123173IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-11123169IPR009057Homeodomain-like
CDDcd001672.83E-8126170No hitNo description
PfamPF002495.7E-11126170IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEFETSYPTC FMSNSSWFSQ EGQFTEWTRE ENKKFESALA IYDKDTPDRW LRVAAMLPGK  60
TVYDVIKQYR ELEEDVCEIE AGRIPVPGYP TSSFTLEMVD NQCYDACRKK PATLRSSDQE  120
RKKGVPWTEE EHRRFLMGLL KYGKGDWRNI SRNFVVTKTP TQVASHAQKY YIRQKLSGGK  180
DNKRRPSIHD ITIVNLTSDQ EKPLLFNDES HMTSEQQKLT SMPKVQLEWR INHHNNGGSN  240
YDMFVSPNSS GFSSKTLKLQ GQDFYECAFH ETYAKLKNTG FRTASRDFNK EAIFGIHAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-171997381RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN17851.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312000.0KT031200.1 Glycine max clone HN_CCL_92 MYB/HD-like transcription factor (Glyma11g34930.7) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028198175.10.0transcription factor DIVARICATA-like isoform X1
RefseqXP_028198176.10.0transcription factor DIVARICATA-like isoform X1
SwissprotQ8S9H71e-88DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A445HH530.0A0A445HH53_GLYSO; Transcription factor DIVARICATA isoform A
STRINGGLYMA11G34930.60.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.14e-90MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]