PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN18159.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 848aa    MW: 93226.6 Da    PI: 6.4262
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN18159.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.6e-191977357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  KHN18159.1 19 KYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 77
                5679*****************************************************97 PP
2START173.31.5e-541683762205
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++ +++l+v s+g  g+++l +++l
  KHN18159.1 168 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPT-RVAEILKDRLSWFRDCRTVDVLNVMSTGngGTIELLYMQL 265
                 7899******************************************************.9999999999****************************** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +a+++l+p Rdf+ +Ry+  l++g++v++++S++++q+ p     +++vRa +lpSg+li+p+++g+s +++v+h+ l+ ++++++lr+l++s++  ++
  KHN18159.1 266 YAPTTLAPgRDFWLLRYTSLLEDGSFVVCERSLNNTQNGPAmppVQHFVRADMLPSGYLIRPCEGGGSIIHIVDHMVLEPWSVPEVLRPLYESSMLLAQ 364
                 **************************************99988899***************************************************** PP

                 HHHHHHTXXXXX CS
       START 194 ktwvatlqrqce 205
                 +t++a+l+++++
  KHN18159.1 365 RTTMAALRHLRQ 376
                 *******99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.5971478IPR001356Homeobox domain
SMARTSM003891.3E-151682IPR001356Homeobox domain
SuperFamilySSF466893.68E-171882IPR009057Homeodomain-like
CDDcd000861.28E-161979No hitNo description
PfamPF000461.7E-162077IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-182177IPR009057Homeodomain-like
CDDcd146861.16E-671110No hitNo description
PROSITE profilePS5084824.162158386IPR002913START domain
CDDcd088754.61E-77162377No hitNo description
SMARTSM002347.9E-40167377IPR002913START domain
SuperFamilySSF559613.3E-35167378No hitNo description
Gene3DG3DSA:3.30.530.204.1E-20167373IPR023393START-like domain
PfamPF018528.6E-52168376IPR002913START domain
PfamPF086701.6E-51707847IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 848 aa     Download sequence    Send to blast
MAVSSACKDG SKVALDNGKY VRYTPEQVEA LERLYHECPK PSSLRRQQLI RECPILSNIE  60
PKQIKVWFQN RRCREKQRKE ASRLQAVNRK LTAMNKLLME ENDRLQKQVS HLVYENSFFR  120
QQTHNNNATL ATTDTNTSCE SVVTSGQRNL TPQQHPPRDA SPAGLLSIAE ETLAEFLSKA  180
TGTAVEWVQM PGMKPGPDSI GIVAISHGCP GVAARACGLV GLEPTRVAEI LKDRLSWFRD  240
CRTVDVLNVM STGNGGTIEL LYMQLYAPTT LAPGRDFWLL RYTSLLEDGS FVVCERSLNN  300
TQNGPAMPPV QHFVRADMLP SGYLIRPCEG GGSIIHIVDH MVLEPWSVPE VLRPLYESSM  360
LLAQRTTMAA LRHLRQISQE VSQPSVTGWG RRPAALRALS QRLSKGFNEA VNGFADDGWS  420
MLESDGIDDV TLLVNSSPSK MMGVSLVYNN NGFPSVSSSV LCAKASMLLQ NVPPAILLRF  480
LREHRSEWAD SSIDAYSAAA IKAGPCSLPG ARSGGFGGQV ILPLAHTIEH EEASYLFMEV  540
IKLENMGYYR DDMSIPGDVF LLQLCSGVDE HAVGTSAELV FAPIDASFSD DAPILPSGFR  600
IIPLDSGTDA ASPNRTLDLA SALEVGTTAN KAASDNSAHS GSTKSVMTIA FQFAFEVHLQ  660
ENIATMARQY VRSIIASVQR VSLALSPSRF GSHNAFHLPP GTPEAQTLAR WICNSYRFYL  720
GVELLKCEGS ESILKSLWHH SDAVLCCSLK ALPVFTFANQ AGLDMLETTL VALQDITLEK  780
IFDDNGKKTL CTEFPQIMQQ GFMCIQGGIC LSSMGRPVSY ERAVAWKVLN EEESAHCICF  840
MFINWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN18159.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003526496.10.0homeobox-leucine zipper protein ATHB-15
RefseqXP_028235534.10.0homeobox-leucine zipper protein ATHB-15-like
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLA0A0B2QDS10.0A0A0B2QDS1_GLYSO; Homeobox-leucine zipper protein ATHB-8
STRINGGLYMA06G09100.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  5. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  6. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  7. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  8. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  9. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]