PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN18250.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 219aa MW: 24816.3 Da PI: 8.3635

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN18250.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85	1.2e-26	48	137	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY +YA++vGF vr+ + ++s +g++ r++ C+k+g++ ++k e+++r++ r gCka++ vk+ek+gkw vt+++++HnH+l KHN18250.1 48 KFYVDYARRVGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNNKGILGPEKKPRPSAREGCKATILVKLEKSGKWIVTRFVKDHNHPLI 137 6******************************************999**************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-24	48	137	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MDSVVVDSDK GNEAEHSCLE ESISIFGGVE VQEPYVGMEF GSEEDARKFY VDYARRVGFV 60 VRIMQRRRSG IDGRTLARRL GCNKQGFSPN NKGILGPEKK PRPSAREGCK ATILVKLEKS 120 GKWIVTRFVK DHNHPLIATA NGFSTAGDKD KKIVELTMEL ERQDQLCAAY REKLLSFISN 180 VEEETEELST KIQLIIENVR RAESDMKKCS QNRKPWCLT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN18250.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020206718.1	1e-151	protein FAR1-RELATED SEQUENCE 7 isoform X1
TrEMBL	A0A0B2QAJ6	1e-161	A0A0B2QAJ6_GLYSO; Protein FAR1-RELATED SEQUENCE 5
STRING	GLYMA18G24443.1	1e-161	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	6e-76	FAR1 family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]