PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN18326.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 320aa    MW: 34234.6 Da    PI: 7.743
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN18326.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.63.8e-12159204555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  KHN18326.1 159 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 204
                 99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-17152214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-13152208No hitNo description
PROSITE profilePS5088817.39154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16156213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-9159204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MLSNLPSSSW NLHETTPDNN VVFPYDVEQA NLASKFRNHQ ITTDNDKASA LMLHHHLLLS  60
SSAAAANSQL LHMPFDSSAP NDVVDAPSFK SLTPNGEPAS VQALYNGFSG SLQPNNQTHH  120
FQQHPQPQSF GASAPANGGG SGQPKQRVRA RRGQATDPHS IAERLRRERI AERMKALQEL  180
VPNANKTDKA SMLDEIIDYV KFLQLQVKVL SMSRLGGAAA VAPLVAEGGG DCIQAKRSNS  240
NDSLAMTEQQ VAKLMEEDMG SAMQYLQGKG LCLMPISLAS AISKATCHPF INGDGPSSPR  300
MSALTLANAV VKDAASVSKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163168RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN18326.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028208600.10.0transcription factor bHLH69-like isoform X5
SwissprotQ9ZUG94e-85BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A0R0F9G30.0A0A0R0F9G3_SOYBN; Uncharacterized protein
STRINGGLYMA17G08300.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47783352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.12e-63LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  4. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]