PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN18341.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 580aa    MW: 64063.6 Da    PI: 7.6048
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN18341.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00073491513123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp+C k+F++   L  H r+H
  KHN18341.1 491 HECPICFKVFPSGQALGGHKRSH 513
                 79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.06E-61335No hitNo description
SMARTSM003550.381335IPR015880Zinc finger, C2H2-like
PfamPF139120.00611335IPR007087Zinc finger, C2H2
PROSITE profilePS501579.7851335IPR007087Zinc finger, C2H2
PROSITE patternPS0002801535IPR007087Zinc finger, C2H2
SuperFamilySSF576678.06E-695122No hitNo description
SMARTSM003550.097100122IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.242100127IPR007087Zinc finger, C2H2
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
PfamPF139124.1E-6102124IPR007087Zinc finger, C2H2
PROSITE profilePS501579.868401428IPR007087Zinc finger, C2H2
SuperFamilySSF576673.44E-6401423No hitNo description
SMARTSM003550.14401423IPR015880Zinc finger, C2H2-like
PfamPF139125.9E-11401425IPR007087Zinc finger, C2H2
PROSITE patternPS000280403423IPR007087Zinc finger, C2H2
SuperFamilySSF576673.44E-6486513No hitNo description
PfamPF139124.0E-12490514IPR007087Zinc finger, C2H2
SMARTSM003550.074491513IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974491513IPR007087Zinc finger, C2H2
PROSITE patternPS000280493513IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MEGDHHRIQE LKHACKFCGK CFPCGRSLGG HMRSHITNLS SEMMNEKKEK LSSSLNNGGD  60
KDSEAAAATN AAASYGLREN PKKTWRISDY SSEDPLVFDK FCKECGKGFH SWKALFGHMK  120
CHSEKERVSN SLEDQDSWTN SAKMVMDSQS DNEATAPNKR RRSKRRTRYT VVASSAAAAT  180
TSSVVSFANP SSSSLSEVEQ EQEEVAMSLM MLSRDVSPWS GRHSVAESSD NNSAYFEARS  240
SVRTNLVTKF DCSNKNFPPK TAKVTKQSDN KWEVGNSENP NSIRGTSSQL LTTIAASDNI  300
TTEIPENGFR VNKSRVSNKG YERAKSELEY VSALEDSEGE HGRSRVNGTE SVLSKSVTTT  360
GNKYSSIKTK FSGSEMKSNK NLVDKASEAE SSKNSNKRGK FECTTCNKIF HSYQALGGHR  420
ASHKKIKGCF ASTNESSENS IETDPSPDPI ATENKLMKNS DSEYLVEHQH GASLHNEGET  480
VNESKKSKGH HECPICFKVF PSGQALGGHK RSHMVGGSES RNFQTIVPQE PVAEIRDFLD  540
LNLPASTEEE SYSHADSNSN RPWWIVEDNH KQEALVGLIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157164NKRRRSKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN18341.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9671250.0KC967125.1 Glycine max C2H2-type zinc finger protein 4 (ZFP4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304591.20.0zinc finger protein ZAT4
RefseqXP_006600570.10.0uncharacterized LOC102666705 isoform X1
RefseqXP_014624884.10.0uncharacterized LOC102666705 isoform X1
RefseqXP_028209465.10.0uncharacterized protein LOC114392503
RefseqXP_028209466.10.0uncharacterized protein LOC114392503
RefseqXP_028209467.10.0uncharacterized protein LOC114392503
TrEMBLA0A445G3M80.0A0A445G3M8_GLYSO; Zinc finger protein ZAT4 isoform A
TrEMBLK7MKG40.0K7MKG4_SOYBN; Uncharacterized protein
STRINGGLYMA17G08480.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-32C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]