PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN18464.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 188aa    MW: 21511.9 Da    PI: 9.6009
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN18464.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28.4e-101767655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
         HLH  6 nerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                + +Er+RR +++s  ++L + +P+++  +sk  ls  + L +A  YIk+L+
  KHN18464.1 17 KTIERNRRIHMKSLCFKLVSTIPSNYLKTSKDmLSQQDQLHLAATYIKHLR 67
                689*********************664555555****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-9478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.42E-4971No hitNo description
PROSITE profilePS508889.1781166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-81680IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-61766IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MKNTNTNTSG SPKLDRKTIE RNRRIHMKSL CFKLVSTIPS NYLKTSKDML SQQDQLHLAA  60
TYIKHLRERI EKLKGEKEKA MNMMMMSNQS NNRIFNTGSE LPLLEIKDLG SGIEVMLISG  120
LNKNFMLYEV ISVLEEEGAE VVAANFSTVA DKIFYTFHAQ VKISRVGVEP ARVYQRLQEL  180
IAPLESWE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN18464.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0959830.0BT095983.1 Soybean clone JCVI-FLGm-15G16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028209979.11e-138transcription factor bHLH162-like
TrEMBLA0A445G4861e-137A0A445G486_GLYSO; Transcription factor bHLH162 isoform A
STRINGGLYMA05G02110.21e-119(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68492141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.18e-20bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]