PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN18508.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 229aa    MW: 24888.9 Da    PI: 7.6694
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN18508.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.6e-11110157455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L++++P +    +k   Ka +L + ++YI+sLq
  KHN18508.1 110 SHSLAERARREKISERMKILQDIVPGC----NKVIGKALVLDEIINYIQSLQ 157
                 8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.63E-10104161No hitNo description
SuperFamilySSF474599.03E-18104175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-18106176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.542106156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-8110157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-10112162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MEPPLINDST FSSANPSLSE IWPSHFPTDH TPSNKRHLSP STDCGSNKHI KSSGSGSQDQ  60
NGALKAGEVD ATSVAGNKLP EQTAKPSSSE QPPKQDYIHV RARRGQATDS HSLAERARRE  120
KISERMKILQ DIVPGCNKVI GKALVLDEII NYIQSLQHQV EFLSMKLEAV NSRLSMSPTI  180
ECFPSKEVGT QPFDLAGIIF GSQPARGYAQ GSQPGWLHMQ IAGGFEKAT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN18508.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311240.0KT031124.1 Glycine max clone HN_CCL_216 bHLH transcription factor (Glyma17g10290.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003549652.11e-171transcription factor bHLH79
RefseqXP_028211695.11e-171transcription factor bHLH79-like
SwissprotQ69WS33e-70BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A445G4H31e-169A0A445G4H3_GLYSO; Transcription factor BHLH094 isoform A
TrEMBLI1MTN21e-169I1MTN2_SOYBN; BHLH transcription factor
STRINGGLYMA17G10290.11e-170(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-72BIG PETAL P
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]