PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN18551.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 248aa    MW: 27604.6 Da    PI: 6.9263
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN18551.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  lv +++++G+g+W++++   g+ R+ k+c++rw +yl
       KHN18551.1 14 KGPWTPEEDISLVSYIQEHGPGNWRAVPTNTGLMRCSKSCRLRWTNYL 61
                     79********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-23564IPR009057Homeodomain-like
PROSITE profilePS5129423.645965IPR017930Myb domain
SMARTSM007172.5E-121363IPR001005SANT/Myb domain
PfamPF002491.2E-151461IPR001005SANT/Myb domain
SuperFamilySSF466895.59E-221588IPR009057Homeodomain-like
CDDcd001674.35E-111661No hitNo description
PROSITE profilePS500904.47262102IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.1E-76588IPR009057Homeodomain-like
SMARTSM007173766147IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MGRPPCCDKI GIKKGPWTPE EDISLVSYIQ EHGPGNWRAV PTNTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF TEHEEKMIIH LQALLGNRVN GREGCKQISK WTTTLVVPDD ATKPSSSSHH  120
QPYNHASSSY ASSYENISRL MENWMKPPNS TNNSPGYYSS FSNMVNNNTS TTGSSSSEGA  180
HSTTTTTTQD QGFDCFLTLN SSKQYYGSPS QTQVPLTLLE NWLFDDGAAQ CHEDLMNMSL  240
EESTAGLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-13128825100MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light) (PubMed:16005291, PubMed:21637967). Promotes guard cell deflation in response to water deficit. Triggers root growth upon osmotic stress (e.g. mannitol containing medium) (PubMed:21637967). {ECO:0000269|PubMed:16005291, ECO:0000269|PubMed:21637967}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN18551.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonic acid (JA) and salicylic acid (SA) (PubMed:16463103). Triggered by auxin (IAA) in roots (PubMed:9839469, PubMed:21637967). Stimulated by light, UV-light and cold (PubMed:9839469). According to PubMed:16005291 and PubMed:23828545, rapidly repressed by abscisic acid (ABA) in an ABI1-dependent manner. But in contrast, according to PubMed:21637967, transiently induced by ABA in seedlings (PubMed:16005291, PubMed:21637967, PubMed:23828545). Rapidly repressed by drought. Activated by white light, but repressed by blue light and darkness (PubMed:16005291). Transiently induced by salt (NaCl) in seedlings. Induced by sucrose (PubMed:21637967). Positively regulated by SCAP1 (PubMed:23453954). {ECO:0000269|PubMed:16005291, ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:21637967, ECO:0000269|PubMed:23453954, ECO:0000269|PubMed:23828545, ECO:0000269|PubMed:9839469}.
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027331764.13e-97transcription factor MYB94
SwissprotB3VTV74e-64MYB60_VITVI; Transcription factor MYB60
SwissprotQ8GYP52e-64MYB60_ARATH; Transcription factor MYB60
TrEMBLA0A0D4D9833e-84A0A0D4D983_9FABA; MYBJ2
STRINGAES699195e-82(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101634115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.11e-60myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Galbiati M, et al.
    Gene trap lines identify Arabidopsis genes expressed in stomatal guard cells.
    Plant J., 2008. 53(5): p. 750-62
    [PMID:18036199]
  3. Rusconi F, et al.
    The Arabidopsis thaliana MYB60 promoter provides a tool for the spatio-temporal control of gene expression in stomatal guard cells.
    J. Exp. Bot., 2013. 64(11): p. 3361-71
    [PMID:23828545]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  6. Kim D,Ntui VO,Xiong L
    Arabidopsis YAK1 regulates abscisic acid response and drought resistance.
    FEBS Lett., 2016. 590(14): p. 2201-9
    [PMID:27264339]