PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN18688.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 286aa MW: 31870.4 Da PI: 8.1752

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN18688.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0015	101	123	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H KHN18688.1 101 YECKTCNRCFPSFQALGGHRASH 123 99**********99999998887 PP
2	zf-C2H2	13.8	0.00017	196	218	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H KHN18688.1 196 HECSICGAEFSSGQALGGHMRRH 218 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.14E-8	100	123	No hit	No description
SMART	SM00355	0.14	101	123	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	1.9E-10	101	125	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.286	101	128	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	103	123	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.14E-8	191	218	No hit	No description
Pfam	PF13912	8.3E-13	195	219	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.01	196	218	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.743	196	218	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	198	218	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MQKQEELNAE CKDHMQIIKG KRTKRQRLPS PLRLTMSTTC SSLGGRSSTE NSLGFDLPTT 60 SNESRNEEED MANCLILLAQ GDRNNSTPKP SHNNKGGLYL YECKTCNRCF PSFQALGGHR 120 ASHKKYYSKA SAEEKQGVLA TFVNEVDNNN NHNHDDYYCD TTSTTLTLQL STALYNNNNS 180 SSNTRMSTIN AKCKVHECSI CGAEFSSGQA LGGHMRRHRN FGSAPTCGAI NANRESKKHN 240 KDVLNLDLNL PAPEDDHHRE SKLFPFQAKE KVIVFSATSS LVDCHY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN18688.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT093974	0.0	BT093974.1 Soybean clone JCVI-FLGm-18A15 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028225902.1	0.0	zinc finger protein ZAT5-like
TrEMBL	A0A445LE13	0.0	A0A445LE13_GLYSO; Zinc finger protein ZAT5
STRING	GLYMA03G34320.1	1e-160	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF586	34	141

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	1e-50	C2H2 family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]