PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN18732.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 423aa    MW: 48234.1 Da    PI: 5.5424
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN18732.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.69.8e-34391291100
                   HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
  HSF_DNA-bind   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                   aFl+k++e+++d++l+ +isw ++g sfvv+d++ fa++vLp+ Fkh+nf+SFvRQLn+YgF+k+++e+         weF ++ F++gk++ll++i
    KHN18732.1  39 AFLSKTFELVDDPSLDPIISWGSTGVSFVVWDPTLFARHVLPRNFKHNNFSSFVRQLNTYGFRKIDTEK---------WEFFNEAFQRGKRHLLKNI 126
                   69****************************************************************999.........******************* PP

                   XXX CS
  HSF_DNA-bind  98 krk 100
                   +r+
    KHN18732.1 127 RRR 129
                   **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.97E-3435129IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.3E-5536129IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.4E-3637129IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.5E-3040129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-184063IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-187890IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434079103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-1891103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MNSSPSSSQL PSSSADFDKL NSLPRFRPLE CLQGNPVPAF LSKTFELVDD PSLDPIISWG  60
STGVSFVVWD PTLFARHVLP RNFKHNNFSS FVRQLNTYGF RKIDTEKWEF FNEAFQRGKR  120
HLLKNIRRRG PPQSHQVGGN IVPYSDADKA GLEFELESLR KERSVLMQEV VELQQQQRTT  180
LQRARQVNQR LQSAELIQKQ MVSFLARLFE KPAFLTSLQH AKEQRDLGCP KVRRRFIKQH  240
QGQTEISDFL NEGQIVRYQP DWRNVTTSSE IQEMYPVSLE ESPNYLSQAL AKEFSEGTEN  300
LISDEVMSIA DTMGFKSSSF GLDGNLFKGK NVMSSNEGLL AEEFVSFPED LTKETGFPEF  360
SPLGTEGIIK REDKRNTNFD VSGADSSSGN EQWGNPINYE VPEFVVTSGM TDMWDINYLT  420
HSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-243712917120Heat shock factor protein 1
5d5u_B7e-243712926129Heat shock factor protein 1
5d5v_B7e-243712926129Heat shock factor protein 1
5d5v_D7e-243712926129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN18732.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0961331e-159BT096133.1 Soybean clone JCVI-FLGm-15K24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028225969.10.0heat stress transcription factor A-3-like
TrEMBLA0A445LE430.0A0A445LE43_GLYSO; Heat stress transcription factor A-3
STRINGGLYMA03G34900.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87823038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.17e-85heat shock transcription factor A3
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]