PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN18821.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 125aa    MW: 14556.6 Da    PI: 10.4608
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN18821.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.61.1e-323492159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                ldDgy+WrKYGqK vk++ +prsYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+
  KHN18821.1 34 LDDGYRWRKYGQKAVKNNIHPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 92
                59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-342092IPR003657WRKY domain
SuperFamilySSF1182903.53E-292693IPR003657WRKY domain
PROSITE profilePS5081129.1722994IPR003657WRKY domain
SMARTSM007741.5E-373493IPR003657WRKY domain
PfamPF031064.1E-263592IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MAEKSDKETM KGGRLRKTTR PRFAFQTRSE DDILDDGYRW RKYGQKAVKN NIHPRSYYRC  60
THHTCNVKKQ VQRLSKDTSI VVTTYEGIHN HPCEKLMETL TPLLRQMQFL SRLASNNNGG  120
PSSLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-272491774Probable WRKY transcription factor 4
2lex_A5e-272491774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN18821.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028206835.12e-91probable WRKY transcription factor 43
SwissprotQ8VWQ44e-58WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBLA0A0B2QB564e-90A0A0B2QB56_GLYSO; Putative WRKY transcription factor 56
TrEMBLA0A445GDL76e-90A0A445GDL7_GLYSO; Putative WRKY transcription factor 56
STRINGGLYMA16G03480.23e-90(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32273471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.12e-60WRKY DNA-binding protein 56
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]