PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN18942.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 322aa    MW: 36190.7 Da    PI: 7.0242
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN18942.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.82.7e-33612031128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgyWka 85 
                 lp+G++F+P+d+e++ e+L++kv+++ ++l+        +++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++      + +W++
  KHN18942.1  61 LPAGVKFDPNDQEIL-EHLEAKVASDACKLHPlidefipTLEGEnGICYTHPEKLP-GVSKDGQIRHFFHRPSKAYTTGTRKRRKVHtddegsETRWHK 157
                 799***********9.99********95553333333222333336**********.555666777******************744456555788*** PP

         NAM  86 tgkdkevlsk.kgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                 tgk+++v+++ +g+++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  KHN18942.1 158 TGKTRAVFAAaGGAVKGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 203
                 ********9978889**********6658***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-3655222IPR003441NAC domain
PROSITE profilePS5100534.12661222IPR003441NAC domain
PfamPF023655.6E-1562203IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MTWCNDSDED RVIESTTPTI TITPNTDGIK LTEEIRTITC PSCGHNIEFK DQGGIHDLPG  60
LPAGVKFDPN DQEILEHLEA KVASDACKLH PLIDEFIPTL EGENGICYTH PEKLPGVSKD  120
GQIRHFFHRP SKAYTTGTRK RRKVHTDDEG SETRWHKTGK TRAVFAAAGG AVKGFKKILV  180
LYTNYGRQKK PEKTNWVMHQ YHLGSTEEEK DGELVVSKVF YQTQPRQCGN PIIIKDSYEK  240
MLNDGSGQDN INISLIPKTT ATLLDCYTAP YIDYDHVHVS HNRESSSQLI IPSSVVQVDG  300
SYIRLTMDAK KARFESNTGK RF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN18942.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312200.0KT031220.1 Glycine max clone HN_CCL_58 NAC transcription factor (Glyma15g08480.4) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546008.10.0NAC domain-containing protein 73
RefseqXP_028205153.10.0NAC domain-containing protein 73-like
SwissprotO494591e-120NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A0B2QGN40.0A0A0B2QGN4_GLYSO; NAC domain-containing protein 73 isoform A
TrEMBLI1MEN30.0I1MEN3_SOYBN; NAC transcription factor
STRINGGLYMA15G08480.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-112NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  4. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]