PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN18955.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 849aa    MW: 95774.7 Da    PI: 4.2642
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN18955.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.3e-08364383525
                 --SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                 +C+ffa+ G+C +G++C+F H
  KHN18955.1 364 ICDFFAK-GWCIRGSSCSFLH 383
                 7******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.615359386IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.69E-6359383IPR000571Zinc finger, CCCH-type
SMARTSM003560.002360385IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-6364383IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    Send to blast
MSIPDSPFAE DVEIDPSLDD DDEEEEETEE EEEEEEEVEE EEVEEEEEVE EEEVEEEEVE  60
EELEEEEVEE IEVEEEEEEG EQGEEQQVEE MEEEEEEEVE EEEVEEEEEE EQQQQQQEAV  120
EEKKEEQQQQ HQAEAAMEEQ EEVPMEEKEE DKPAVPGSPL DADKDRKDYG QHMEFEGQDK  180
NLGPVSSVAE NPEVMPPSSM HCMEENNVML KKSDIPTLKK EELPLKYEIS SHPKSRENLT  240
SVEVCRSQGL DVEVENDGSL LQKKTFRGYC VPGCNSKANL CGDNNIDSRA RATKSSSDTV  300
QDMVIGPLPR DCLVEDSNGG QNSRNKIMLS EMESRDDAKQ MTSRTRNLSP SAEIKDGNKR  360
PRIICDFFAK GWCIRGSSCS FLHIKDTGDN TDQEAEADSV STYQKRQLKV EEGVRENVER  420
SRMNEQEATP SWHPSQEKQK FPPRDNLFPD NRFPFSASDN YLSPNLSLNS TRADGMATPR  480
NQHMYKGYTS TLLSHLPNSS LVTQFAASSM SLSHRILAQS GRSLPFSSSL GASNVDSLKF  540
LNTDKEYLTS KSTFSGSGRE DFSLVSSSRV PSYPAGYKSK ICSYDWEPSV PFRPSFFITS  600
MNVSSPGDLY DPLRDSIEIP NIGDGSLKAS LLIHGSNVQA SSQVRTYGDS AVVGKHMSNF  660
NDDKSSVSSH NKFCENEPNK NCLPHEKDCL PPETEITSGT YQGKMGMGQH TFGVADSTKN  720
ERDVTECDAR RHGEGSGHKK KRVDRDKKNH EMDGDFQIDG SIQKESKALK FFRAALVDHV  780
KELLKPAWHE GHLSKDAHIM IVKKSVDKVV STLEPHQIPI MDTAKQYVSS SQVKIAKLVN  840
GYVNKYGKY
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN18955.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028203588.10.0protein FRIGIDA-ESSENTIAL 1-like isoform X2
TrEMBLA0A0B2QCF60.0A0A0B2QCF6_GLYSO; Zinc finger CCCH domain-containing protein 27
STRINGGLYMA15G08331.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108052733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-46C3H family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]