PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN19014.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 69aa    MW: 7684.13 Da    PI: 11.076
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN19014.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.55.5e-26958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                k+i++ + rqvtfskR+ g++KKA ELS LCdae+a+i+fs+ gkl++y 
  KHN19014.1  9 KKIDDVTARQVTFSKRKSGLFKKARELSLLCDAEIALIVFSPGGKLFDYG 58
                689********************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.5E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.174161IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-25323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-26361IPR002100Transcription factor, MADS-box
CDDcd002653.64E-33360No hitNo description
PfamPF003191.7E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
MVRRKIPIKK IDDVTARQVT FSKRKSGLFK KARELSLLCD AEIALIVFSP GGKLFDYGSS  60
RLPFPAGSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A4e-19363262Myocyte-specific enhancer factor 2A
3mu6_B4e-19363262Myocyte-specific enhancer factor 2A
3mu6_C4e-19363262Myocyte-specific enhancer factor 2A
3mu6_D4e-19363262Myocyte-specific enhancer factor 2A
5f28_A5e-19162162MEF2C
5f28_B5e-19162162MEF2C
5f28_C5e-19162162MEF2C
5f28_D5e-19162162MEF2C
6byy_A5e-19160160MEF2 CHIMERA
6byy_B5e-19160160MEF2 CHIMERA
6byy_C5e-19160160MEF2 CHIMERA
6byy_D5e-19160160MEF2 CHIMERA
6bz1_A5e-19160160MEF2 CHIMERA
6bz1_B5e-19160160MEF2 CHIMERA
6bz1_C5e-19160160MEF2 CHIMERA
6bz1_D5e-19160160MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN19014.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-60AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541785.15e-35MADS-box protein JOINTLESS isoform X2
RefseqXP_006594670.19e-35MADS-box protein SVP isoform X1
RefseqXP_006594672.15e-35MADS-box protein JOINTLESS isoform X2
RefseqXP_014621339.15e-35MADS-box protein JOINTLESS isoform X2
RefseqXP_028188416.19e-35MADS-box protein SVP-like isoform X1
RefseqXP_028188417.15e-35MADS-box protein JOINTLESS-like isoform X2
RefseqXP_028188418.15e-35MADS-box protein JOINTLESS-like isoform X2
SwissprotQ9LT938e-25AGL71_ARATH; MADS-box protein AGL71
TrEMBLA0A0B2QFR73e-41A0A0B2QFR7_GLYSO; MADS-box protein AGL24
STRINGGLYMA13G33031.12e-34(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.22e-27AGAMOUS-like 71
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]